Please send the result of the command:<div><br></div><div><font class="Apple-style-span" face="&#39;courier new&#39;, monospace">uname -a</font><br><br><div class="gmail_quote">On Mon, Feb 21, 2011 at 10:31, Carolina Valencia <span dir="ltr">&lt;<a href="mailto:cvalencia@linkdx.com.co">cvalencia@linkdx.com.co</a>&gt;</span> wrote:<br>

<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Hi Bruce,<div><br><div>I&#39;m experimenting problems with the installation on Ubuntu too.</div><div>There&#39;s is warning in the welcome message, it seems that something is missing: </div>

<div><br></div><div><div>-------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0 --------</div>
<div>Setting up environment for FreeSurfer/FS-FAST (and FSL)</div><div>WARNING: /home/cvalencia/Descargas/freesurfer/fsfast does not exist</div><div>FREESURFER_HOME   /home/cvalencia/Descargas/freesurfer</div><div>FSFAST_HOME       /home/cvalencia/Descargas/freesurfer/fsfast</div>


<div>FSF_OUTPUT_FORMAT nii</div><div>SUBJECTS_DIR      /home/cvalencia/Descargas/freesurfer/subjects</div><div>MNI_DIR           /home/cvalencia/Descargas/freesurfer/mni</div><div>FSL_DIR           /usr/share/fsl/4.1</div>


</div><div><br></div><div><br></div><div>I try to test it and it shows</div><div><div>cvalencia@cvalencia-Precision-WorkStation-T3400:~$ tkmedit</div><div>/home/cvalencia/Descargas/freesurfer/bin/tkmedit.bin: Formato de ejecutable incorrecto. Binary file not executable.</div>


<div><br></div><div>Thanks a lot,</div><div><br></div><div>Carolina</div><br><div class="gmail_quote">2011/2/18 Bruce Fischl <span dir="ltr">&lt;<a href="mailto:fischl@nmr.mgh.harvard.edu" target="_blank">fischl@nmr.mgh.harvard.edu</a>&gt;</span><br>


<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Jie,<br>
<br>
what hardware are you using? Is it a 64 bit operating system?<br>
<br>
cheers<br><font color="#888888">
Bruce</font><div><div></div><div><br>
On Sat, 19 Feb 2011, Liukarl wrote:<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
Hello, Freesurfer experts:<br>
<br>
<br>
<br>
I am new to freesurfer and try to<br>
install the newest version of freesurfer in Ubuntu system. I closely<br>
followed the instructions, and the only difference is that I<br>
installed it in my Documents, instead of local folder.<br>
<br>
<br>
<br>
Below is the output after “source<br>
$FREESURFER_HOME/SetUpFreeSurfer.sh”<br>
<br>
<br>
<br>
--------<br>
freesurfer-Linux-centos4-stable-pub-v5.0.0 --------<br>
<br>
Setting up environment for<br>
FreeSurfer/FS-FAST (and FSL)<br>
<br>
FREESURFER_HOME<br>
/home/jie/Documents/freesurfer/<br>
<br>
FSFAST_HOME<br>
/home/jie/Documents/freesurfer//fsfast<br>
<br>
FSF_OUTPUT_FORMAT nii<br>
<br>
SUBJECTS_DIR<br>
/home/jie/Documents/freesurfer//subjects<br>
<br>
MNI_DIR<br>
/home/jie/Documents/freesurfer//mni<br>
<br>
<br>
<br>
<br>
Everything seems fine and I also added<br>
the .license file to the freesurfer folder.<br>
<br>
<br>
<br>
But when I test it by “tkmedit bert<br>
orig.mgz”, it reponds “Illegal instruction”<br>
<br>
<br>
<br>
If I type in “recon-all”, it will<br>
show<br>
<br>
“ Required Arguments:<br>
<br>
  -subjid &lt;subjid&gt;<br>
<br>
  -&lt;process directive&gt;…...<br>
”<br>
and the other arguments.<br>
<br>
<br>
<br>
How to fix the problem and make<br>
Fressurfer run? Any help is appreciated. Thanks a lot!<br>
<br>
<br>
<br>
Jie<br>
</blockquote>
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