External Email - Use Caution        

I receive an error when I try to run the sclimbic module, do you have any suggestions on why this might be happening? : Loaded input image from /mnt/V/Datasets/BSNIP2/Processing/Finished_q2/GP1462~1/mri/nu.mgz

Traceback (most recent call last):

  File "/usr/local/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 1048, in <module>

    main()

  File "/usr/local/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 232, in main

    segmenter.process_files(**params)

  File "/usr/local/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 577, in process_files

    post, seg, vox_counts, volumes, mean_probs = self.segment(image)

  File "/usr/local/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 497, in segment

    conformed = self.preprocess(image)

  File "/usr/local/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 489, in preprocess

    processed = image.conform(shape=(*self.inshape, self.nchannels), voxsize=1.0, orientation='RAS', dtype='float32', copy=False)

  File "/usr/local/freesurfer/7.3.2/python/lib/python3.8/site-packages/surfa/image/framed.py", line 574, in conform

    conformed = conformed.reshape(shape, copy=False)

  File "/usr/local/freesurfer/7.3.2/python/lib/python3.8/site-packages/surfa/image/framed.py", line 515, in reshape

    delta = (np.array(shape) - np.array(self.baseshape)) / 2

ValueError: operands could not be broadcast together with shapes (4,) (3,)

Segmentation fault

Victor Zeng

Beth Israel Deaconess Medical Center

Keshavan Lab

--

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer