On Wed, 2006-09-06 at 13:43 -0700, Graham Wideman wrote:
Folks -- probably Nick?
I'd like to be able to work with some FS sessions using uncompressed data,
ie: not using mgz files. (Why? So that I can conveniently use some other
tools for troubleshooting and inspection, tools that don't know how to
uncompress mgz files).
Questions:
1. If I just try to gunzip mgz files, some of their names collide with the
directories that mksubjdirs has set up. Historically, most of these dirs
used to act as containers for per-slice COR files, so they don't seem
useful anymore. Can they just be deleted without consequence?
Yes, those directories (orig, T1, etc...) formally used to store COR
files can be deleted without consequence (that is, assuming you have
the .mgz or .mgh files).
2. I'm assuming that the uncompressed files should be given the extension
".mgh". Do the FS pipeline scripts and programs automatically adapt to
uncompressed files?
Yes, freesurfer recognizes the filename extension .mgh (and just doesnt
do the gunzip on it internally).
Thanks,
Graham
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