Hi Andrew,
It is expected that you would not see this warning with Freesurfer version 5.1.
Its just a warning, but tcsh v6.17.06 on Ubuntu always returns exit code 0. This can be problematic for instances where recon-all encounters and error and should fail. If you ran recon-all and have all the expected files than you should be all set.
I believe you can use the Ubuntu Update Manager tool to install the latest version tcsh.
-Zeke
On 05/30/2013 01:19 PM, Andrew Bock wrote:
_______________________________________________Hello everyone,
I just updated to Freesurfer 5.3.0, my OS is Ubuntu 12.04. When I run
'recon-all -i <T1 image> -subjid <subject name>' I receive the following
error:
WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!
The directory structure appears to be set up correctly, and the command
finishes without error. I do not receive this error when using
Freesurfer 5.1.0. I have yet to run 'recon-all -all -subjid <subject
name>' in 5.3.0. Any ideas on what produces this error? is it safe to
ignore?
Thanks in advance,
Andrew
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