Hello FreeSurfer Developers,

I am working on running a mass-univariate linear mixed effects model with cortical thickness data, and I have a question about the step that segments the initial covariance estimates into homogenous regions. The next step from the LME webpage (figure; p1 = patch(surf); …) creates figures of the left hemisphere projected onto a sphere and shows clusters of the significant vertices. I am having trouble interpreting this spherical figure. Can it be opened in freesurfer, (i.e. in freeview or tksurfer), so that I can see these clusters projected onto, for example, the inflated cortex (e.g. of fsaverage)?

Thank you,

Daliah Ross

Daliah Ross | dross3@mail.yu.edu

Ph.D. Student, Clinical Psychology with Health Emphasis

Ferkauf Graduate School of Psychology

Yeshiva University

Albert Einstein College of Medicine