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Hi Doug,

Yes that's the area. Thank you for your help!

Angel Hammond

Research Specialist

Center for Healthy Minds

University of Wisconsin-Madison

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <dgreve@mgh.harvard.edu>
Sent: Thursday, July 23, 2020 9:37 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Subcortical Structure Pial Line Exclusion

do you mean where the cursor is? That's in hippocampus or amygdala, so it is fine that the pial surfaces cuts through them

On 7/21/2020 1:44 PM, Angel Hammond wrote:

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Hello Freesurfer Experts,

I think I may already know the answer to this, but just wanted to check in to be sure. I know that in general when checking the recon for a subject for pial and wm line correctness, that subcortical structure segmentation within those lines is not that important to correct. I was looking at a subject that looks to be be omitting subcortical structures from the pial line and persists for many slices. Is this something that needs to be corrected with wm edits or is this not to be worried about? I included some screenshots of the area.

Thanks!

Angel Hammond

Research Specialist

Center for Healthy Minds

University of Wisconsin-Madison
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