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FREESURFER_HOME was set to

/autofs/space/locus_001/users/mv1048/LC_HYP/FS6/

 

(the FS6 folders contains our folders of subjects processed with FreeSurfer)

 

I am working remotely on a Linux (Centos 7.9.2009) via screen sharing on my Mac (Intel, OS 10.15.7)

 

Thank you

Heidi

 

From: fsbuild <fsbuild@contbay.com>
Date: Sunday, 20 August 2023 at 17:04
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Cc: "Jacobs, Heidi I.,PHD" <HJACOBS@mgh.harvard.edu>
Subject: Re: [Freesurfer] ScLimbic issue

 

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Please let us know what FREESURFER_HOME is set to, and what (Linux or Mac) operating system your machine is running.  If you are on a Mac please indicate if it is one of the current silicon Macs (M1, M2, chip) or one of the older Intel Macs.

 

- R.



On Aug 20, 2023, at 14:57, Jacobs, Heidi I.,PHD <HJACOBS@mgh.harvard.edu> wrote:

 

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Hello FreeSurfer team,

 

I am trying to run the sclimbic tool on our FreeSurfer processed images (from the Martinos center).

For some unknown reason I keep getting the same problem:

Excluding seg [853]

Using CPU

Illegal instruction (core dumped)

 

Not sure what this means?
I have sourced /usr/local/freesurfer/nmr-dev-env  and set the SUBJECTS_DIR correctly.

I tried with the - - s option referring to the FreeSurfer processed subject as well as the - - i option, referring to the orig.mgz image.

Using the nifti image or the mgz image doesn’t make a difference either.

 

Any suggestions on what the problem may be or how to resolve this?

 

Thank you

All the best

Heidi

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