Hi Jie

Can you clarify what you mean by “head info. Disappeared in a sagittal slice”? Do you mean the head was cropped? If so, that probably just means you have to adjust the fov that you are cropping if you can.

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Jie Zhao
Sent: Saturday, September 26, 2020 7:26 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mri_extract issue

        External Email - Use Caution        

Hi, Freesurfer Team

  My input volume dimension is 248*176*320, so I use mri_extract scale to 256*256*256. However, the output volume lose some info. eg.some head info. disappeared in sagiital slice. How can scale my input voluem to 256*256*256, and also do not lose info.Thanks in advance!

All best,

Jie