On Wed, Dec 15, 2010 at 11:11 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

specify -ns 1 (for no scaling)

On Wed, 15 Dec 2010, Yang Liu wrote:

Hello all,

I am converting one .mgz file to another like this:

mri_convert -i a.mgz -o conformed_a.mgz --conform

The data type of a.mgz is float. After the conversion, The conformed_a.mgz
is uchar. However, I found that the places surrounding the brain which have
0 grayscale values in the a.mgz are having grayscale value 108 in the
confored_a.mgz.
This makes the conformed_a.mgz very whitish compared to the original one.

Is there a way to make the float 0 to a uchar 0?

Thanks.

Yang

The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.