Tue Dec 20 18:11:59 CET 2016 /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula /aramis/home/wen/Applications/FS/freesurfer/bin/trac-all -prep -c /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/config_file/sub-PREVDEMALS0010001BE_config.txt Subject sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0 SUBJECTS_DIR /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/Freesurfer/Reconall/reconall_GENFI/clinica_reconall_result/prevdemals_67subjs/analysis-series-default/subjects FREESURFER_HOME /aramis/home/wen/Applications/FS/freesurfer Actual FREESURFER_HOME /aramis/home/wen/Applications/FS/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 wen DELLEED1 Linux DELLEED1 4.2.0-42-generic #49~14.04.1-Ubuntu SMP Wed Jun 29 20:22:11 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63924 maxlocks unlimited maxsignal 63924 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16386724 2791704 13595020 112636 61516 895260 -/+ buffers/cache: 1834928 14551796 Swap: 7999484 0 7999484 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/12/20-17:11:59-GMT BuildTimeStamp: Aug 22 2014 21:04:47 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: wen Machine: DELLEED1 Platform: Linux PlatformVersion: 4.2.0-42-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/12/20-17:12:00-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: wen Machine: DELLEED1 Platform: Linux PlatformVersion: 4.2.0-42-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/12/20-17:12:00-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: wen Machine: DELLEED1 Platform: Linux PlatformVersion: 4.2.0-42-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/12/20-17:12:00-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: wen Machine: DELLEED1 Platform: Linux PlatformVersion: 4.2.0-42-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/12/20-17:12:00-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: wen Machine: DELLEED1 Platform: Linux PlatformVersion: 4.2.0-42-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/12/20-17:12:00-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: wen Machine: DELLEED1 Platform: Linux PlatformVersion: 4.2.0-42-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/12/20-17:12:01-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: wen Machine: DELLEED1 Platform: Linux PlatformVersion: 4.2.0-42-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-preproc wen DELLEED1 Linux DELLEED1 4.2.0-42-generic #49~14.04.1-Ubuntu SMP Wed Jun 29 20:22:11 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63924 maxlocks unlimited maxsignal 63924 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16386724 2847068 13539656 112640 61524 948912 -/+ buffers/cache: 1836632 14550092 Swap: 7999484 0 7999484 #------------------------------------- /aramis/home/wen/Applications/FS/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Dec 20 18:12:02 CET 2016 mri_convert /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/dwi/sub-PREVDEMALS0010001BE_ses-M0_dwi.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.nii.gz mri_convert /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/dwi/sub-PREVDEMALS0010001BE_ses-M0_dwi.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/dwi/sub-PREVDEMALS0010001BE_ses-M0_dwi.nii.gz... crypt_gkey = FShcQvYXXTGaI TR=7300.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0.975917, 0.218143) k_ras = (0, -0.218143, 0.975917) writing to /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.nii.gz... crypt_gkey = FShcQvYXXTGaI cp /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/dwi/sub-PREVDEMALS0010001BE_ses-M0_dwi.bvec /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.mghdti.bvecs cp /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/dwi/sub-PREVDEMALS0010001BE_ses-M0_dwi.bval /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.mghdti.bvals mv -f /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/bvecs.tmp /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.mghdti.bvecs mv -f /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/bvals.tmp /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.mghdti.bvals flip4fsl /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -15.625 fslswapdim /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.nii.gz x y z /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig_flip.nii.gz INFO: found /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig_flip.mghdti.bvecs /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/bvecs mv -f /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig_flip.mghdti.bvals /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/bvals eddy_correct /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_orig_flip.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi.nii.gz 0 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0000 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0001 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0002 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0003 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0004 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0005 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0006 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0007 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0008 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0009 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0010 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0011 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0012 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0013 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0014 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0015 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0016 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0017 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0018 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0019 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0020 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0021 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0022 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0023 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0024 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0025 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0026 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0027 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0028 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0029 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0030 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0031 processing 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/aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0117 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0118 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0119 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0120 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0121 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0122 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0123 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0124 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0125 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0126 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0127 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0128 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0129 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0130 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0131 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0132 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0133 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0134 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0135 processing /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_tmp0136 mv -f /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/bvecs /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/bvecs.norot xfmrot /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi.ecclog /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/bvecs.norot /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/bvecs mv -f /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/dwi_eddy.nii.gz mri_convert /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/fmap/sub-PREVDEMALS0010001BE_ses-M0_magnitude1.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0mag.nii.gz mri_convert /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/fmap/sub-PREVDEMALS0010001BE_ses-M0_magnitude1.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0mag.nii.gz $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/fmap/sub-PREVDEMALS0010001BE_ses-M0_magnitude1.nii.gz... crypt_gkey = FShcQvYXXTGaI TR=688.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0.975917, 0.218143) k_ras = (0, -0.218143, 0.975917) writing to /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0mag.nii.gz... crypt_gkey = FShcQvYXXTGaI flip4fsl /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0mag.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0mag.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -27 fslswapdim /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0mag.nii.gz x y z /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0mag.nii.gz fslorient -forceradiological /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0mag.nii.gz mri_convert /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/fmap/sub-PREVDEMALS0010001BE_ses-M0_phasediff.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0pha.nii.gz mri_convert /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/fmap/sub-PREVDEMALS0010001BE_ses-M0_phasediff.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0pha.nii.gz $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/fmap/sub-PREVDEMALS0010001BE_ses-M0_phasediff.nii.gz... crypt_gkey = FShcQvYXXTGaI TR=688.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0.975917, 0.218143) k_ras = (0, -0.218143, 0.975917) writing to /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0pha.nii.gz... crypt_gkey = FShcQvYXXTGaI flip4fsl /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0pha.nii.gz /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0pha.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -27 fslswapdim /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0pha.nii.gz x y z /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0pha.nii.gz fslorient -forceradiological /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0pha.nii.gz mri_probedicom --i /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/fmap/sub-PREVDEMALS0010001BE_ses-M0_phasediff.nii.gz > /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/tracula_result/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0/dmri/b0info.dat 20092 DCM failed to open file: /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/dMRI/tracula/dmri_data_test/sub-PREVDEMALS0010001BE/ses-M0/fmap/sub-PREVDEMALS0010001BE_ses-M0_phasediff.nii.gz in DCM_OpenFile Linux DELLEED1 4.2.0-42-generic #49~14.04.1-Ubuntu SMP Wed Jun 29 20:22:11 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux trac-preproc exited with ERRORS at Tue Dec 20 18:21:36 CET 2016