Hi Bryna - I see that the error occurs in the corticospinal tract. Any change the top or bottom of the brain is truncated in this subject's scan?

Anastasia.
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Goeckner, Bryna <bgoeckner@mcw.edu>
Sent: Thursday, March 17, 2022 11:53 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Reposting TRACULA trac-all -prep finishes with errors
 

        External Email - Use Caution        

Attaching config file & link to trac-all.log (trac-all/log is kind of big – so freesurfer listserv blocked email).  Hopefully you are able to access them this way.

 

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mcw.box.com/s/fol3dnv5wjbicyfop0rvhl0sampczfm1

 

 

From: Goeckner, Bryna <bgoeckner@mcw.edu>
Date: Monday, February 14, 2022 at 4:42 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: TRACULA trac-all -prep finishes with errors

Hi FreeSurfer Developers,

 

I am attempting to run data for several subjects through TRACULA using trac-all -prep, but some of them have finished with errors.  I have checked registration for all of them and it looks ok.

 

I am including a link to my config file, and the trac-all.log and trac-all.error files for one subject:

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mcw.box.com/s/jqvvsv9a8ban3ao9gginngpy9aly9xeg

 

FreeSurfer version: freesurfer-linux-centos6_x86_64-7.2.0-20210720-aa8f76b

 

Any help you can give me is greatly appreciated.  Thanks!

 

Bryna Goeckner (she/her)

Graduate Student

Medical College of Wisconsin

Neuroscience Doctoral Program