What do you mean a "plot"? I had assumed you wanted to average over
clusters, but FDR does not produce clusters


On 11/07/2016 04:26 PM, Mihaela Stefan wrote:
> That seems to be for Monte Carlo simulation. What if I use FDR or if I
> want to look at a plot from an uncorrected map?
>
> Thanks!
> Mihaela
>
> On Mon, Nov 7, 2016 at 3:16 PM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
>
>     Run mri_glmfit-sim using the Qdec output folder as the --glmdir and
>     setting the thresholds and signs as you had them in qdec. The output
>     will then be in a file called something like cache.th20.pos.y.ocn.dat.
>     the cluster summary table will be in
>     cache.th20.pos.sig.cluster.summary
>
>
>     On 11/07/2016 12:33 PM, Mihaela Stefan wrote:
>     > Hello Freesurfers,
>     >
>     > I am doing a group analysis using Qdec. I have a few significant
>     > clusters and I would like to plot one of them. Qdec does that if I
>     > click on 'Find Clusters and Goto Max' but I don't see options
>     for the
>     > design of the plot.
>     > How can I export the thickness values from my cluster to
>     reproduce the
>     > Qdec plot in another program?
>     >
>     > Thank you!
>     > Mihaela
>     >
>     >
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>     MGH-NMR Center
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MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

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