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Unfortunately I tried this before emailing and no luck. Any other advice?

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu>
Sent: Monday, March 25, 2019 11:06:53 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] mri_glmfit flags not working

Try this
mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C lh-Avg-thickness-age-Cor.mtx --glmdir lh.V1_gender_age.glmdir
You would only use --surface if the input is a surface map (not when the input is a table, even if the table has data derived from the surface)

On 3/23/19 3:39 PM, Olamide Abiose wrote:

External Email - Use Caution

Hello,

I am struggling to run mri_glmfit because various flags seem to be going unrecognized.

This is my command:

mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C lh-Avg-thickness-age-Cor.mtx —-surf fsaverage lh —-cortex --glmdir lh.V1_gender_age.glmdir

Where "V1_lh_stats.txt" is a table of V1 thickness values produced by aparcstats2table. I've run into issues with the --table, --fsgd, and --surf flags (as I shuffle around the command line arguments and/or replace the --table flag with a --y flag). Any idea what's going wrong?

Thank you!
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