Hi,

I'm trying to run asegstats2table 

asegstats2table  --subjects subjlist.csv --skip --delimiter comma --common-segs --tablefile asegs_03042016.csv

All subjects in the subjlist are present in the directory but I get this error message:

Parsing the .stats files
Building the table..
Traceback (most recent call last):
  File "/usr/local/freesurfer/bin/asegstats2table", line 560, in <module>
    rows, columns, table = sanitize_table(options, pretable)
  File "/usr/local/freesurfer/bin/asegstats2table", line 454, in sanitize_table
    _specs, _id_name_map, _measl = _t[0]
IndexError: list index out of range

I get the error message even if I reduce the list to two subjects. It works if I do this (all subjdirs begin with PD):

asegstats2table  --subjects PD* --skip --delimiter comma --common-segs --tablefile asegs_03042016.csv

And it works if I enter the subjects' names individually. With over 100 subjects, however, that's not an option.

I'd be grateful for any suggestion on how to run asegstats2table with a subjects list.

Thank you!

sincerely yours,

Lars M. Rimol, PhD
Senior researcher,
Norwegian Advisory Unit for functional MRI
Department of Radiology,
St. Olav's University hospital,
7006 Trondheim,
Norway