FYI, fsaverage is already in MNI305 space

On 08/01/2018 11:14 AM, Peled, Noam wrote:
>
> Thanks Lilla!
>
> Just to be sure, when using the --mni flag, should I remove the 
> --template flag?
>
> Also, is there any way I can calculate the registration directly to
> MNI305 and not MNI152?
>
>
> Thanks again,
>
> Noam
>
> ------------------------------------------------------------------------
> *From:* freesurfer-bounces@nmr.mgh.harvard.edu
> <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Lilla Zollei
> <lzollei@nmr.mgh.harvard.edu>
> *Sent:* Wednesday, August 1, 2018 8:35:49 AM
> *To:* Freesurfer support list
> *Subject:* Re: [Freesurfer] mri_cvs_register using fsaverage
>
> Hi Noam,
>
> Can you can use the --mni flag?
>
> "Use the CVS atlas in MNI152 space as a target for registration (as
> opposed to the default CVS template)"
>
> Lilla
>
> On Wed, 1 Aug 2018, Peled, Noam wrote:
>
> >
> > I need to transfer one of our patient's electrodes locations (depth
> electrodes, they aren't located on the cortical surface) to MNI305 space.
> > For that, I'm trying to use mri_cvs_register to register the patient
> to fsaverage. I'm using to the following command:
> >
> >
> > mri_cvs_register --mov subjid --template fsaverage --outdir
> output_name --nocleanup
> >
> > And I'm getting the following error:
> > fsaverage : at least one mean and/or Gaussian curvature file is
> missing (.H, .K)
> >
> > Indeed, fsaverage doesn't have the rh/lh.inflated.K/H files.
> > Any ideas?
> >
> > Thanks,
> > Noam
> >
> >
> >
> >
> >
> >
> >
> >
> >
>
>
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