I'm attempting to compute cortical thickness and to analyze it between groups.
So
I perform "recon-all", but rather than using recon-all -all, some
problems arise while performing each of the steps in it. These problems
are as follwing.
1. By perform "Curvature Stats" of recon-all in parallel, This
process is required for ?h.curv file. This file is created after -white
or -whitesurf process, but looking at recon-all file in
/usr/local/freesurfer/bin/, -whitesurf is running after this process, so
I think so, Is it correct to move position of curvature stats after the
pialsurf to fix the error?
2. Looking at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
and recon-all file, because order of autorecon -all is different
between two reference, I am confused. Can you please tell me which one
to refer to?
2) Platform: Ubuntu release 18.04.1
3) uname -a: Linux LABPC 5.4.0-70-generic #78~18.04.1-Ubuntu SMP Sat Mar 20 14:10:07 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log: see attached
Thank you very much.
Sincerely,
Yoonho
--
Hwang, Yoonho
Medical Image Processing Laboratory (MIPL),
Department of Biomedical Engineering, Yonsei University.
#218 Sanhak-Kwan, 1, Yeonsedae-gil, Heungeop-myeon, Wonju,
Gangwon-do, 26493, Republic of Korea.
Office: +82-33-760-2499
Email: ken.lmstar11@gmail.com