# T1 images and FreeSurfer segmentations are expected to be found here

setenv SUBJECTS_DIR /Users/r0755008/Desktop/mri_data/STRUCT

# Output directory where trac-all results will be saved
# Default: Same as SUBJECTS_DIR
#
set dtroot = /Users/r0755008/Desktop/mri_data/TRACULA

set subjlist = (NT001 NT001)

set dcmroot = /Users/r0755008/Desktop/mri_data/DIFFUSION
set dcmlist = (NT001/front.nii NT001/reverse.nii)

set bveclist = (NT001/front.bvec NT001/reverse.bvec)

set bvallist = (NT001/front.bval NT001/reverse.bval)

set dob0 = 2

# Echo spacing (this is found in the scanner protocol printout)
# Only used if dob0 = 1 or 2
# Default: None
#
set echospacing = 0.227045

set epifactor = 57

set pedir = (AP PA)

set doeddy = 1

set pathlist = (lh.uf rh.uf lh.ilf rh.ilf lh.slf1 rh.slf1 lh.slf2 rh.slf2 lh.slf3 rh.slf3)