This is how the white matter changes look like after making corrections and running recon all.  

From: "Limachia , Gaurang (NIH/NINDS) [F]" <gaurang.limachia@nih.gov>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, May 17, 2016 at 4:49 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Freesurfer

I made the necessary changes to the white matter, and when I ran recon all
the changes with the voxels showed up, but there was no change to the
contour lines. In order to change the gray matter volume, I can©öt find the
changes I already made on the white matter (the picture with green control
points). If I am able to see the changes I made to the white matter, I can
utilize the control points to modify the segmentation. Also will this
impact the gray matter volume as well as per your previous response to my
question. 

Thanks,

Gaurang