Not sure what it will do then. It will put vertices in that region. When you run samseg, add --save-mesh

On 12/21/2022 8:18 AM, Don Se wrote:

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Ah, I see. However, I would like to get it for brain scans with a pathology (a tumour).
2022-12-21, tr, 05:39 Douglas N. Greve <dgreve@mgh.harvard.edu> rašė:
Why not samseg?

On 12/20/2022 12:50 PM, Donatas Sederevičius wrote:
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Hi, is there a tool to make a tetrahedral mesh of the brain from the MRI T1w image and/or its whole-brain segmentation? I need it for the finite elements method.

-Don
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