Hi Sarina,

Can you please send me the full log of the LGI (e.g. recon-all.log) for this subject?

Thanks,

Marie

On Jul 28, 2014, at 7:23 AM, "Sarina Iwabuchi" <Sarina.Iwabuchi at nottingham.ac.uk<mailto:Sarina.Iwabuchi at nottingham.ac.uk>> wrote:

Hi all,

I have been trying to run localGI and have been coming across errors. It creates the filled.mgz file and opens matlab (running 2012a) but crashes straight after with the below errors:

>> reading filled volume...
set: Variable name must begin with a letter.
gunzip: Command not found.
ERROR: problem reading fname
set: Variable name must begin with a letter.
rm: Command not found.
SWITCH expression must be a scalar or string constant.

Error in load_mgh (line 158)
switch type

Error in MRIread (line 87)
  [mri.vol, M, mr_parms, volsz] = load_mgh(fspec,[],[],headeronly);

Error in make_outer_surface (line 24)
    vol=MRIread(filled_volume);

Has anyone come across this? I do have gunzip on my system.

Thanks very much,



Sarina Iwabuchi
Division of Psychiatry and Applied Psychology
Room B07 Institute of Mental Health
Triumph Road
University of Nottingham
Nottingham NG7 2TU