Hi, Freeview does not look up SUBJECT
environment variable. So you will need to cd into your subject
directory before running the command, or use the full path in the
command for every file.
Ruopeng
On 11/7/12 9:50 AM, Catherine Bois wrote:
Hi, I am trying to use freeview to look at
wm/brainmask etc however the command wont work. The command Im
suing is
freeview -v wm1_edits_before/mri/wm.mgz:colormap=heat:opacity=0.4 wm1_edits_before/mri/brainmask.mgz \
-f wm1_edits_before/surf/lh.white:edgecolor=blue wm1_edits_before/surf/lh.pial:edgecolor=red \
wm1_edits_before/surf/rh.white:edgecolor=blue wm1_edits_before/surf/rh.pial:edgecolor=red
(but i am exchanging paths for my own data). However, it keeps saying that operation console failed, and for some reason, even though Ive set the subject directory to where the files are kept it
keeps looking in my home directory. I recently attended a course in freesurfer, but this problem was not explained? Grateful for help.
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