Dear Corinne,

A bunch of libraries are currently broken in the development version; apologies for this. A way around this is installing FreeSurfer 7.4.1, and using its fspython to run the WMh-SynthSeg code. Apologies for the inconvenience!

Cheers,

/E

PS: I just updated the wiki to include this information.

--

Juan Eugenio Iglesias

http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Corinne Alison Donnay <corinne.donnay@linacre.ox.ac.uk>
Date: Friday, April 5, 2024 at 12:43 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] WMH-SynthSeg - Torch module not found

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Good Afternoon!

I was working with my IT department to install the development version of FreeSurfer on our server so that I could use WMH-SynthSeg. IT installed development version 2024-04-14. After loading the freesurfer development module, and running source $FREESURFER_HOME/SetUpFreeSurfer.sh, I still get the following error:

Is there any way to fix this or figure out what is wrong?

Thank you!

Corinne