Thank you Martin.

Turns out that our cluster had crashed and killed the task due to hard drive space limitations. Its all fixed now and have been able to go through the tutorial at http://ftp.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial for a single subject with 3 time points. One question that I have is what is the color key for the 3D images viewed in freeview or tksurf? My subject has some yellow, red, blue, gray areas, with the majority of the brain being light blue. I just wanted to make sure I understood exactly what the data is actually depicting.

Best wishes,

Sal


On Thu, Jul 4, 2013 at 8:16 AM, Martin Reuter <mreuter@nmr.mgh.harvard.edu> wrote:
Hi Sal,

not sure why the nu correction is crashing for you. 

can you check how the 
FS/RZ_1484_POST_FS.long.RZ_1484_Base/mri/orig.mgz 
and rawavg.mgz look?
Also make sure the talariach.xfm is correct in the template (base).

Next time please send the recon-all.log file (from the subject's scripts directory). It gives us more information than just the screen output.

Best, Martin

On Jul 4, 2013, at 1:17 AM, Salil Soman <salsoman@stanford.edu> wrote:

Hi,

I have been trying to run the FS longitudinal analysis on a subject with 3 time points. I ran each time point thourgh FS, made the template, but when I run the last step I do not get mri/norm files and the output files state nu_evaluate: crashed while running mincmath (termination status = 768), see attached log. Any suggestions on what I am doing incorrectly?

Best wishes,

Sal

Salil Soman, MD, MS
<RZ_1484_LONG_POST.o893489>_______________________________________________
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---------------------------------
Dr. Martin Reuter
Assistant in Neuroscience - Massachusetts General Hospital
Instructor in Neurology   - Harvard Medical School
MGH / HMS / MIT

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