That does not look like a human brain, and it does not look like a traditional T1 (eg, MPRAGE). Eg, there are dark bands between WM and cortex; this may be the cause of the problem. Not sure why the inflated being offset is a problem

On 4/4/2023 1:58 AM, 韦亚辉 wrote:

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On Tues, 4 April 2023, YaHui Wei wrote:
Hello freesurfers,
   I am getting some problems in pial reconstruction that the pial can not expand well to the real surface (result is below).
 
   Thus I’ve tried to check the ?h.inflated and ?h.inflated.nofix and found they had a large offset from the volume. The image below shows the volume, ?h.smoothwm and ?h.inflated.

    I wonder if the offset causing the pial reconstruction error, and if so how can I solve this problem.
    Can I get your suggestions? Thanks.



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