Hi, Freesurfer Experts
After usual processing with recon-all -all we get the aseg.stats file with several data including intensity values like:
normMean normStdDev normMin normMax normRange
Left-Hippocampus 77.8939 7.5748 46.0000 105.0000 59.0000
How could I get similar results for each hippocampal subfield, assuming I also generated all posterior*.mgz files corresponding to each subfield?
I guess I should first binarize each of the subfields file with a threshold=127 to map all the pertinent voxels, and then use these files as masks over nu.mgz and calculate the intensities values. But I do not know the best way to accomplish this after the binarize step.
Thank you in advance for any help.
Marcos