Hi Pietro,

I’m not familiar with AnatomiCuts so I can’t answer that part of your question. For visualizing tracts, freeview can load .trk files generated by TrackVis/DTK. They do not support embedded colors. It can also load tract volumes in 4D mgz format, which do support embedded colors.

Best,
Ruopeng

On Jan 5, 2021, at 6:32 PM, Pietro Astolfi <pastolfi@fbk.eu> wrote:

        External Email - Use Caution        


Hi,

In the last days I searched for documentation about the use of embedded colors when visualizing tracts in freeview. I wasn’ t able to find any information online. 

I also tried to obtain a tract containing the embdedd colors information by using `dmri_AnatomiCuts` (both with fs 7.1.0 on OS X and dev version on Ubuntu ), but despite many trials I always got the same runtime error:
terminating with uncaught exception of type std::runtime_error: Gak!
Abort trap: 6 

If anyone could help me it would be very appreciated,

Best,

Pietro

Pietro Astolfi
PhD student 
ICT school - University of Trento
NILab - Bruno Kessler Foundation
PAVIS - Italian Institute of Technology


--
Le informazioni contenute nella presente comunicazione sono di natura privata e come tali sono da considerarsi riservate ed indirizzate esclusivamente ai destinatari indicati e per le finalità strettamente legate al relativo contenuto. Se avete ricevuto questo messaggio per errore, vi preghiamo di eliminarlo e di inviare una comunicazione all’indirizzo e-mail del mittente.
--
The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. If you received this in error, please contact the sender and delete the material.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer