mkdir: cannot create directory '/usr/local/freesurfer/subjects/NYS': Permission denied
mkdir: cannot create directory '/usr/local/freesurfer/subjects/NYS': Permission denied
mkdir: cannot create directory '/usr/local/freesurfer/subjects/NYS': Permission denied
cp: cannot create regular file '/usr/local/freesurfer/subjects/NYS/scripts/build-stamp.txt': No such file or directory
cat: /usr/local/freesurfer/subjects/NYS/scripts/build-stamp.txt: No such file or directory
INFO: FreeSurfer build stamps do not match
Subject Stamp:
Current Stamp: freesurfer-Linux-centos6_x86_64-dev-20160611-876a0e6
/usr/local/freesurfer/subjects/NYS/scripts/patchdir.txt: No such file or directory.

recon-all used to work fine when I used the stable 5.3 version.
I think it may have something to do with the fact that I previously ran recon-all in v.5.3, and so the current subject directory's stamp is still 5.3 (or blank..) and it does not match the current stamp of the dev version? I am not sure..
Could anyone tell me how I can fix this problem?

Thanks in advance,
Subin