We'll have to figure out where those 229s are coming from. Try this
mri_binarize --i aseg.presurf.mgz --match 229 --o bin229.mgz
It should print out whether there were any voxels that matched. If so, you can load bin229.mgz with the norm.mgz and the aseg.presurf.mgz and see where they are. If there are not any, then do the same thing with aparc+aseg.mgz

On 10/7/2019 4:54 PM, Marina Fernández wrote:

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Dear Douglas,

Sorry! This is the previous information:

> Dear Douglas,

>  

> Thank you for the replay.

>  

> I think so, I can't find the code 229 in any subject.

>   

> I can't see anything strange in the aparc+aseg.mgz. The cerebral voxels have the normal > > segmentation and labels. Could it be a problem with the extracerebral voxels?

>   

> Best regards,

> Marina.

 > That is kind of weird. It says it has found a segmentation with number

> 229, but we don't have that code in our system. Can you find the 229 voxels
> in the aparc+aseg.mgz?

> Dear experts,
>
> The following error occurs with one subject when I am running gtmseg
> command:
>
> Computing colortable
> ERROR: cannot find match for subcortical segid 229
> ERROR: mri_gtmseg -s qsm_04_year3 --usf 2 --o gtmseg.mgz --apas
> apas+head.mgz --no-subseg-wm --no-keep-cc --no-keep-hypo
> gtmseg existed with errors
> ans=1
>
> Do you know what happened with this subject? What can I do to solve it?
>
> Thank you very much in advance.
> Marina.

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