Hi Manabu,

yes, you can run the post-processing (lme analysis) on the 5.1 data. The matlab tools should work, if any command line tool fails (e.g. stacking based on longitudinal qdec table), let us know and we'll send an updated script for that (or you copy it from 5.3 if you have that available).

Best, Martin

On 10/24/2014 10:38 AM, Manabu Kubota wrote:

Hi experts,

I'm planning to apply linear mixed effects models to my longitudinal MRI dataset.

I found the LME Matlab tools are not included in FreeSurfer ver. 5.1. Is it possible 

to use the standalone copy of the tools linked in the website with FS ver. 5.1?

Do I need to run an extra command to my data before using them?

I have done all the data preprocessing with FS ver. 5.1, and I hope I don't have to do it again

from the beginning with a newer FS version…

Thanks!

Best,

Manabu

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-- 
Dr. Martin Reuter

Instructor in Neurology
  Harvard Medical School
Assistant in Neuroscience
  Dept. of Radiology, Massachusetts General Hospital
  Dept. of Neurology, Massachusetts General Hospital
Research Affiliate
  Computer Science and Artificial Intelligence Lab,
  Dept. of Electrical Engineering and Computer Science,
  Massachusetts Institute of Technology

A.A.Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, MA 02129

Phone: +1-617-724-5652
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   mreuter@nmr.mgh.harvard.edu
   reuter@mit.edu
Web  : http://reuter.mit.edu 

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