Hello everyone,

I am trying to extract clusters showing significant correlation between LGI and a behavioral measure. I am able to extract PCC and sig.mgh but at the last step when I try to run simulation command to view corrected results and I run:

mri_glmfit-sim --glmdir lh.MEQ_LGI.glmdir --cache 4 neg --cwp 0.05 --2spaces

I get following error:

ERROR: cannot find /usr/local/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm35/neg/th40/mc-z.csd

But I can see mc-z.csd file in fwhm30 etc.

Full message on terminal window is attached following.

Any help would be really appreciated.

----- Full message ----

cmdline mri_glmfit.bin --y lh.MEQ_LGI.10.mgh --fsgd MEQ.fsgd dods --C Corr-MEQ-cor.mtx --surf fsaverage lh --cortex --glmdir lh.MEQ_LGI.glmdir

WARNING: unrecognized mri_glmfit cmd option mri_glmfit.bin

SURFACE: fsaverage lh

log file is lh.MEQ_LGI.glmdir/cache.mri_glmfit-sim.log

/usr/local/freesurfer/bin/mri_glmfit-sim

--glmdir lh.MEQ_LGI.glmdir --cache 4 neg --cwp 0.05 --2spaces

$Id: mri_glmfit-sim,v 1.60 2016/04/30 15:13:36 greve Exp $

Mon Mar  6 11:11:13 MST 2017

setenv SUBJECTS_DIR /data/emot/Freesurfer/FreeSurferSegmentation/SB_AgingAll

FREESURFER_HOME /usr/local/freesurfer

Original mri_glmfit command line:

cmdline mri_glmfit.bin --y lh.MEQ_LGI.10.mgh --fsgd MEQ.fsgd dods --C Corr-MEQ-cor.mtx --surf fsaverage lh --cortex --glmdir lh.MEQ_LGI.glmdir

DoSim = 0

UseCache = 1

DoPoll = 0

DoPBSubmit = 0

DoBackground = 0

DiagCluster = 0

gd2mtx = dods

fwhm = 35.073391

ERROR: cannot find /usr/local/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm35/neg/th40/mc-z.csd