Wed May 5 16:44:12 EDT 2021 cd /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385 setenv SUBJECTS_DIR /media/corinna/CMB8TB/freesurfer7.1.1 /usr/local/freesurfer/bin/recon-all -s xMAE_0385 -autorecon-all subjid xMAE_0385 setenv SUBJECTS_DIR /media/corinna/CMB8TB/freesurfer7.1.1 FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 Linux Precision-5820 5.4.0-72-generic #80~18.04.1-Ubuntu SMP Mon Apr 12 23:26:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 513990 maxlocks unlimited maxsignal 513990 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 125G 11G 894M 848M 113G 112G Swap: 975M 768K 975M ######################################## program versions used 7.1.1 (freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551) 7.1.1 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 7.1.1 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 7.1.1 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:12-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.1.1 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:13-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /usr/local/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# MotionCor Wed May 5 16:44:13 EDT 2021 ERROR: no run data found in /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri. Make sure to have a volume called 001.mgz in /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig. If you have a second run of data call it 002.mgz, etc. See also: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion Linux Precision-5820 5.4.0-72-generic #80~18.04.1-Ubuntu SMP Mon Apr 12 23:26:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux recon-all -s xMAE_0385 exited with ERRORS at Wed May 5 16:44:13 EDT 2021 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Wed May 5 16:44:45 EDT 2021 cd /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385 setenv SUBJECTS_DIR /media/corinna/CMB8TB/freesurfer7.1.1 /usr/local/freesurfer/bin/recon-all -s xMAE_0385 -autorecon-all subjid xMAE_0385 setenv SUBJECTS_DIR /media/corinna/CMB8TB/freesurfer7.1.1 FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 Linux Precision-5820 5.4.0-72-generic #80~18.04.1-Ubuntu SMP Mon Apr 12 23:26:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 513990 maxlocks unlimited maxsignal 513990 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 125G 11G 809M 848M 113G 112G Swap: 975M 768K 975M ######################################## program versions used 7.1.1 (freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551) 7.1.1 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 7.1.1 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 7.1.1 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:45-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.1.1 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-20:44:46-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /usr/local/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# MotionCor Wed May 5 16:44:46 EDT 2021 Found 1 runs /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig/001.mgz /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/rawavg.mgz /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385 mri_convert /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/rawavg.mgz /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig.mgz --conform mri_convert /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/rawavg.mgz /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig.mgz --conform reading from /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/rawavg.mgz... TR=5.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.0168234, -0.999858, 0.00041203) j_ras = (0.00973878, 0.000575931, 0.999952) k_ras = (0.999811, 0.0168186, -0.00974709) changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram 0 1023 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig.mgz... @#@FSTIME 2021:05:05:16:44:49 mri_convert N 3 e 1.58 S 0.00 U 1.57 P 99% M 32828 F 0 R 15062 W 0 c 5 w 1 I 0 O 9440 L 0.84 0.78 0.65 @#@FSLOADPOST 2021:05:05:16:44:51 mri_convert N 3 0.84 0.78 0.65 mri_add_xform_to_header -c /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/transforms/talairach.xfm /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig.mgz /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2021:05:05:16:44:51 mri_add_xform_to_header N 4 e 0.46 S 0.01 U 0.44 P 99% M 23620 F 14 R 4587 W 0 c 4 w 16 I 3120 O 9440 L 0.84 0.78 0.65 @#@FSLOADPOST 2021:05:05:16:44:51 mri_add_xform_to_header N 4 0.84 0.78 0.65 #-------------------------------------------- #@# Talairach Wed May 5 16:44:51 EDT 2021 /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri /usr/local/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.1.1 Linux Precision-5820 5.4.0-72-generic #80~18.04.1-Ubuntu SMP Mon Apr 12 23:26:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Wed May 5 16:44:51 EDT 2021 Found /dev/shm , will use for temp dir tmpdir is /dev/shm/tmp.mri_nu_correct.mni.25180 cd /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o /dev/shm/tmp.mri_nu_correct.mni.25180/nu0.mgz Using shrink factor: 4 mri_convert /dev/shm/tmp.mri_nu_correct.mni.25180/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert /dev/shm/tmp.mri_nu_correct.mni.25180/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from /dev/shm/tmp.mri_nu_correct.mni.25180/nu0.mgz... TR=5.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.86265e-09, 0) j_ras = (9.31323e-10, -2.91038e-11, -1) k_ras = (0, 1, -1.45519e-11) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Wed May 5 16:47:18 EDT 2021 mri_nu_correct.mni done @#@FSTIME 2021:05:05:16:44:51 mri_nu_correct.mni N 12 e 146.73 S 0.15 U 146.58 P 100% M 489052 F 17 R 141495 W 0 c 301 w 121 I 4272 O 8880 L 0.84 0.78 0.65 @#@FSLOADPOST 2021:05:05:16:47:18 mri_nu_correct.mni N 12 1.82 1.16 0.81 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at Wed May 5 16:47:18 EDT 2021 Ended at Wed May 5 16:47:36 EDT 2021 talairach_avi done @#@FSTIME 2021:05:05:16:47:18 talairach_avi N 4 e 18.18 S 0.90 U 11.27 P 66% M 255892 F 9 R 396437 W 0 c 109 w 164 I 270632 O 295264 L 1.82 1.16 0.81 @#@FSLOADPOST 2021:05:05:16:47:36 talairach_avi N 4 2.02 1.25 0.85 cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /usr/local/freesurfer/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.1.1 --src: orig.mgz src image (geometry). --trg: /usr/local/freesurfer/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 1.02315 -0.02088 0.00036 -0.68033; -0.00666 0.94252 0.27738 -15.16890; -0.02386 -0.28382 1.04538 -8.77125; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Wed May 5 16:47:38 EDT 2021 /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.6757, pval=0.4932 >= threshold=0.0050) @#@FSTIME 2021:05:05:16:47:38 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 66% M 5960 F 10 R 208 W 0 c 2 w 17 I 2504 O 0 L 2.02 1.25 0.85 @#@FSLOADPOST 2021:05:05:16:47:38 talairach_afd N 4 2.02 1.25 0.85 awk -f /usr/local/freesurfer/bin/extract_talairach_avi_QA.awk /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/transforms/talairach_avi.log tal_QC_AZS /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/transforms/talairach_avi.log TalAviQA: 0.96114 z-score: -3 #-------------------------------------------- #@# Nu Intensity Correction Wed May 5 16:47:38 EDT 2021 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri /usr/local/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 7.1.1 Linux Precision-5820 5.4.0-72-generic #80~18.04.1-Ubuntu SMP Mon Apr 12 23:26:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Wed May 5 16:47:38 EDT 2021 Found /dev/shm , will use for temp dir tmpdir is /dev/shm/tmp.mri_nu_correct.mni.25567 cd /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz Using shrink factor: 4 mri_binarize --i /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz --min -1 --o /dev/shm/tmp.mri_nu_correct.mni.25567/ones.mgz 7.1.1 cwd /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri cmdline mri_binarize --i /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz --min -1 --o /dev/shm/tmp.mri_nu_correct.mni.25567/ones.mgz sysname Linux hostname Precision-5820 machine x86_64 user corinna input /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output /dev/shm/tmp.mri_nu_correct.mni.25567/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777215 voxels in final mask Count: 16777215 16777215.000000 16777216 99.999994 mri_binarize done mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.25567/ones.mgz --i orig.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.25567/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.25567/input.mean.dat 7.1.1 cwd cmdline mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.25567/ones.mgz --i orig.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.25567/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.25567/input.mean.dat sysname Linux hostname Precision-5820 machine x86_64 user corinna whitesurfname white UseRobust 0 Loading /dev/shm/tmp.mri_nu_correct.mni.25567/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /dev/shm/tmp.mri_nu_correct.mni.25567/input.mean.dat mri_segstats done mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.25567/ones.mgz --i /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.25567/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.25567/output.mean.dat 7.1.1 cwd cmdline mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.25567/ones.mgz --i /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.25567/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.25567/output.mean.dat sysname Linux hostname Precision-5820 machine x86_64 user corinna whitesurfname white UseRobust 0 Loading /dev/shm/tmp.mri_nu_correct.mni.25567/ones.mgz Loading /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /dev/shm/tmp.mri_nu_correct.mni.25567/output.mean.dat mri_segstats done mris_calc -o /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz mul .86640257931928011377 Saving result to '/dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz' (type = MGH ) [ ok ] mri_convert /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz nu.mgz --like orig.mgz mri_convert /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz nu.mgz --like orig.mgz reading from /dev/shm/tmp.mri_nu_correct.mni.25567/nu0.mgz... TR=5.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.86265e-09, 0) j_ras = (9.31323e-10, -2.91038e-11, -1) k_ras = (0, 1, -1.45519e-11) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 4 seconds. mapping ( 4, 221) to ( 3, 110) Wed May 5 16:50:23 EDT 2021 mri_nu_correct.mni done @#@FSTIME 2021:05:05:16:47:38 mri_nu_correct.mni N 9 e 164.38 S 0.49 U 163.91 P 100% M 614692 F 26 R 512326 W 0 c 388 w 197 I 6696 O 22560 L 2.02 1.25 0.85 @#@FSLOADPOST 2021:05:05:16:50:23 mri_nu_correct.mni N 9 1.38 1.30 0.94 mri_add_xform_to_header -c /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz @#@FSTIME 2021:05:05:16:50:23 mri_add_xform_to_header N 4 e 0.47 S 0.00 U 0.47 P 99% M 23536 F 1 R 4591 W 0 c 4 w 2 I 256 O 7512 L 1.38 1.30 0.94 @#@FSLOADPOST 2021:05:05:16:50:23 mri_add_xform_to_header N 4 1.38 1.30 0.94 #-------------------------------------------- #@# Intensity Normalization Wed May 5 16:50:23 EDT 2021 /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... talairach transform 1.02315 -0.02088 0.00036 -0.68033; -0.00666 0.94252 0.27738 -15.16890; -0.02386 -0.28382 1.04538 -8.77125; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 9 Starting OpenSpline(): npoints = 9 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Command exited with non-zero status 253 @#@FSTIME 2021:05:05:16:50:23 mri_normalize N 7 e 8.62 S 0.12 U 8.49 P 99% M 436588 F 3 R 144510 W 0 c 25 w 4 I 1016 O 0 L 1.38 1.30 0.94 @#@FSLOADPOST 2021:05:05:16:50:32 mri_normalize N 7 1.64 1.35 0.96 Linux Precision-5820 5.4.0-72-generic #80~18.04.1-Ubuntu SMP Mon Apr 12 23:26:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux recon-all -s xMAE_0385 exited with ERRORS at Wed May 5 16:50:32 EDT 2021 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Wed May 5 17:10:18 EDT 2021 cd /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385 setenv SUBJECTS_DIR /media/corinna/CMB8TB/freesurfer7.1.1 /usr/local/freesurfer/bin/recon-all -s xMAE_0385 -autorecon-all subjid xMAE_0385 setenv SUBJECTS_DIR /media/corinna/CMB8TB/freesurfer7.1.1 FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 Linux Precision-5820 5.4.0-72-generic #80~18.04.1-Ubuntu SMP Mon Apr 12 23:26:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 513990 maxlocks unlimited maxsignal 513990 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 125G 11G 879M 948M 113G 111G Swap: 975M 768K 975M ######################################## program versions used 7.1.1 (freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551) 7.1.1 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:18-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 7.1.1 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 7.1.1 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.1.1 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/05/05-21:10:19-GMT BuildTime: Jul 23 2020 11:55:54 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 User: corinna Machine: Precision-5820 Platform: Linux PlatformVersion: 5.4.0-72-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /usr/local/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# MotionCor Wed May 5 17:10:19 EDT 2021 Found 1 runs /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig/001.mgz /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/rawavg.mgz /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385 mri_convert /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/rawavg.mgz /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig.mgz --conform mri_convert /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/rawavg.mgz /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig.mgz --conform reading from /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/rawavg.mgz... TR=5.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.0168234, -0.999858, 0.00041203) j_ras = (0.00973878, 0.000575931, 0.999952) k_ras = (0.999811, 0.0168186, -0.00974709) changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram 0 1023 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig.mgz... @#@FSTIME 2021:05:05:17:10:22 mri_convert N 3 e 1.56 S 0.01 U 1.54 P 99% M 32804 F 0 R 15060 W 0 c 3 w 1 I 0 O 9464 L 0.65 0.61 0.69 @#@FSLOADPOST 2021:05:05:17:10:24 mri_convert N 3 0.65 0.61 0.69 mri_add_xform_to_header -c /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/transforms/talairach.xfm /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig.mgz /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2021:05:05:17:10:24 mri_add_xform_to_header N 4 e 0.49 S 0.01 U 0.48 P 100% M 23520 F 0 R 4592 W 0 c 5 w 1 I 0 O 9440 L 0.65 0.61 0.69 @#@FSLOADPOST 2021:05:05:17:10:24 mri_add_xform_to_header N 4 0.65 0.61 0.69 #-------------------------------------------- #@# Talairach Wed May 5 17:10:24 EDT 2021 /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri /usr/local/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.1.1 Linux Precision-5820 5.4.0-72-generic #80~18.04.1-Ubuntu SMP Mon Apr 12 23:26:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Wed May 5 17:10:24 EDT 2021 Found /dev/shm , will use for temp dir tmpdir is /dev/shm/tmp.mri_nu_correct.mni.27584 cd /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o /dev/shm/tmp.mri_nu_correct.mni.27584/nu0.mgz Using shrink factor: 4 mri_convert /dev/shm/tmp.mri_nu_correct.mni.27584/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert /dev/shm/tmp.mri_nu_correct.mni.27584/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from /dev/shm/tmp.mri_nu_correct.mni.27584/nu0.mgz... TR=5.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.86265e-09, 0) j_ras = (9.31323e-10, -2.91038e-11, -1) k_ras = (0, 1, -1.45519e-11) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Wed May 5 17:12:53 EDT 2021 mri_nu_correct.mni done @#@FSTIME 2021:05:05:17:10:24 mri_nu_correct.mni N 12 e 148.14 S 0.16 U 147.99 P 100% M 503988 F 0 R 146695 W 0 c 321 w 105 I 0 O 8888 L 0.65 0.61 0.69 @#@FSLOADPOST 2021:05:05:17:12:53 mri_nu_correct.mni N 12 1.74 1.22 0.93 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at Wed May 5 17:12:53 EDT 2021 Ended at Wed May 5 17:13:10 EDT 2021 talairach_avi done @#@FSTIME 2021:05:05:17:12:53 talairach_avi N 4 e 17.11 S 0.94 U 10.16 P 64% M 255836 F 1 R 396529 W 0 c 68 w 147 I 256 O 295264 L 1.74 1.22 0.93 @#@FSLOADPOST 2021:05:05:17:13:10 talairach_avi N 4 1.50 1.19 0.92 INFO: transforms/talairach.xfm already exists! The new transforms/talairach.auto.xfm will not be copied to transforms/talairach.xfm This is done to retain any edits made to transforms/talairach.xfm Add the -clean-tal flag to recon-all to overwrite transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Wed May 5 17:13:10 EDT 2021 /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.6757, pval=0.4932 >= threshold=0.0050) @#@FSTIME 2021:05:05:17:13:10 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 100% M 6016 F 0 R 215 W 0 c 1 w 1 I 0 O 0 L 1.54 1.20 0.93 @#@FSLOADPOST 2021:05:05:17:13:10 talairach_afd N 4 1.54 1.20 0.93 awk -f /usr/local/freesurfer/bin/extract_talairach_avi_QA.awk /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/transforms/talairach_avi.log tal_QC_AZS /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/transforms/talairach_avi.log TalAviQA: 0.96114 z-score: -3 #-------------------------------------------- #@# Nu Intensity Correction Wed May 5 17:13:10 EDT 2021 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri /usr/local/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 7.1.1 Linux Precision-5820 5.4.0-72-generic #80~18.04.1-Ubuntu SMP Mon Apr 12 23:26:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Wed May 5 17:13:10 EDT 2021 Found /dev/shm , will use for temp dir tmpdir is /dev/shm/tmp.mri_nu_correct.mni.27987 cd /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz Using shrink factor: 4 mri_binarize --i /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz --min -1 --o /dev/shm/tmp.mri_nu_correct.mni.27987/ones.mgz 7.1.1 cwd /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri cmdline mri_binarize --i /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz --min -1 --o /dev/shm/tmp.mri_nu_correct.mni.27987/ones.mgz sysname Linux hostname Precision-5820 machine x86_64 user corinna input /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output /dev/shm/tmp.mri_nu_correct.mni.27987/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777215 voxels in final mask Count: 16777215 16777215.000000 16777216 99.999994 mri_binarize done mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.27987/ones.mgz --i orig.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.27987/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.27987/input.mean.dat 7.1.1 cwd cmdline mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.27987/ones.mgz --i orig.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.27987/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.27987/input.mean.dat sysname Linux hostname Precision-5820 machine x86_64 user corinna whitesurfname white UseRobust 0 Loading /dev/shm/tmp.mri_nu_correct.mni.27987/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /dev/shm/tmp.mri_nu_correct.mni.27987/input.mean.dat mri_segstats done mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.27987/ones.mgz --i /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.27987/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.27987/output.mean.dat 7.1.1 cwd cmdline mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.27987/ones.mgz --i /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.27987/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.27987/output.mean.dat sysname Linux hostname Precision-5820 machine x86_64 user corinna whitesurfname white UseRobust 0 Loading /dev/shm/tmp.mri_nu_correct.mni.27987/ones.mgz Loading /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /dev/shm/tmp.mri_nu_correct.mni.27987/output.mean.dat mri_segstats done mris_calc -o /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz mul .86640257931928011377 Saving result to '/dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz' (type = MGH ) [ ok ] mri_convert /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz nu.mgz --like orig.mgz mri_convert /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz nu.mgz --like orig.mgz reading from /dev/shm/tmp.mri_nu_correct.mni.27987/nu0.mgz... TR=5.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.86265e-09, 0) j_ras = (9.31323e-10, -2.91038e-11, -1) k_ras = (0, 1, -1.45519e-11) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 4 seconds. mapping ( 4, 221) to ( 3, 110) Wed May 5 17:15:53 EDT 2021 mri_nu_correct.mni done @#@FSTIME 2021:05:05:17:13:10 mri_nu_correct.mni N 9 e 163.07 S 0.52 U 162.57 P 100% M 614700 F 0 R 512173 W 0 c 409 w 166 I 0 O 22560 L 1.54 1.20 0.93 @#@FSLOADPOST 2021:05:05:17:15:53 mri_nu_correct.mni N 9 1.39 1.32 1.02 mri_add_xform_to_header -c /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz @#@FSTIME 2021:05:05:17:15:53 mri_add_xform_to_header N 4 e 0.47 S 0.00 U 0.47 P 99% M 23580 F 0 R 4595 W 0 c 4 w 1 I 0 O 7512 L 1.39 1.32 1.02 @#@FSLOADPOST 2021:05:05:17:15:53 mri_add_xform_to_header N 4 1.39 1.32 1.02 #-------------------------------------------- #@# Intensity Normalization Wed May 5 17:15:53 EDT 2021 /media/corinna/CMB8TB/freesurfer7.1.1/xMAE_0385/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... talairach transform 1.02315 -0.02088 0.00036 -0.68033; -0.00666 0.94252 0.27738 -15.16890; -0.02386 -0.28382 1.04538 -8.77125; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 9 Starting OpenSpline(): npoints = 9 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Command exited with non-zero status 253 @#@FSTIME 2021:05:05:17:15:53 mri_normalize N 7 e 8.54 S 0.13 U 8.41 P 99% M 436704 F 0 R 144515 W 0 c 22 w 1 I 0 O 0 L 1.39 1.32 1.02 @#@FSLOADPOST 2021:05:05:17:16:02 mri_normalize N 7 1.41 1.33 1.02 Linux Precision-5820 5.4.0-72-generic #80~18.04.1-Ubuntu SMP Mon Apr 12 23:26:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux recon-all -s xMAE_0385 exited with ERRORS at Wed May 5 17:16:02 EDT 2021 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting