I ran recon-all -autorecon 1 -s subjID on  T1 (T1_nii) image and after that, I replaced the skull stripped volume generated from FS with the skull stripped volume from lesion explorer ( using mri_convert in_type analyze  in_orientation LAS out-type img out_orientation LAS mgz; cp folder/brainmask.mgz folder/subjID/mri/brainmask.mgz). Then, I ran recon-all -autorecon2 -autorecon2 -s subjID. My recon-all is stucked at 

CORRECTION DEFECT 0 (vertices=49378, convex hull=3422, v0 =0)

XL defect detected....

Please how do I resolve this problem? 

I am running freesurfer-6 development. I have attached the recon-all/recon-all status to the email. 

Thank you very much