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Dear FreeSurfer experts,

I have used "mri_annnotation2label" and "mri_label2vol" to change the parcellation output of FreeSurfer e.g the lh.aparc.annot into an ".nii" so i can see the parcels in Mricro.

Now I can see the parcels just on the cortex not on the whole graymatter.

The first question I have is that, is the parcellation done on the whole graymatter?

And if yes, is there a way that I can see the volumes on the whole graymatter, not just on the cortex?

I would be grateful if you could help me.

best regards,

Maedeh,

 

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