External Email - Use Caution        

And the El Capitan dev is now fixed, too!

Thanks to Andrew Hoopes for this.

 

-- 

Juan Eugenio Iglesias

ERC Senior Research Fellow

Centre for Medical Image Computing (CMIC)

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

 

 

From: "Iglesias Gonzalez, Eugenio" <e.iglesias@ucl.ac.uk>
Date: Friday, 1 June 2018 at 00:30
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: Problem in subfields development version (T2 mode)

 

Dear all,

The problem should be fixed in the Linux builds. The MAC update will come in the next couple of days.

Apologies again for the inconvenience.

/Eugenio

 

Juan Eugenio Iglesias

Centre for Medical Image Computing (CMIC)

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

 

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Lachlan Strike <l.strike1@uq.edu.au>
Sent: Wednesday, May 30, 2018 7:31 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Subfields Development Version MATLAB:scriptNotAFunction

 

        External Email - Use Caution        

Hi

 

I’m attempting to run the hippocampal/amygdala subfields segmentation in the most recent daily build of FreeSurfer (Centos7). The T1 only and multispectral variations run fine, but attempting the segmentation without the T1 (USE_T1=0) produces the following error:

 

 

Attempt to execute SCRIPT segmentSubjectT2_autoEstimateAlveusML as a function:

/tmp/MCR_3555778206/.mcrCache8.4/segmen0/segmentSubje/segmentSubjectT2_autoEstimateAlveusML.m

 

MATLAB:scriptNotAFunction

Error:Attempt to execute SCRIPT segmentSubjectT2_autoEstimateAlveusML as a function:

/tmp/MCR_3555778206/.mcrCache8.4/segmen0/segmentSubje/segmentSubjectT2_autoEstimateAlveusML.m

Linux vagrant 4.4.0-75-generic #96-Ubuntu SMP Thu Apr 20 09:56:33 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux

 

 

Any ideas? I am running this within a singularity container, but as the T1 and multispec versions ran without error I’m hoping it’s not related to that.

 

 

Thanks


Lachlan

 

 

Queensland Brain Institute

The University of Queensland, Australia