Hello,

I need to get the segmentation of the occipital cortex. I am attempting to generate the corresponding ROI, using the mri_annotation2label command and then running mris_anatomical_stats to merge the labels and get the actual volume. I am calling mri_annotation2label as follows:
mri_annotation2label --subject <ID> --hemi lh --lobesStrict lobefile --outdir 'TEMP'
However, I have a couple of questions:
  1. Is there any way to generate both lh and rh together? Or should I generate separate volumes and then merge them?
  2. What is the structure of the lobefile? I cannot find any example on the wiki.
Thank you very much for your help!
--
Angel Torrado-Carvajal
Postdoctoral Research Fellow
Pain Neuroimaging Laboratory
MGH/HST Athinoula A. Martinos Center for Biomedical Imaging
Building 149, Room 1101, 13th Street, Charlestown, MA 02129 USA