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Thanks for your reply doctor. Actually I want to access Desikan K. Atlas coordinates as  x, y, z. (each regions. for example caudalanteriorcingulate).


In that case, one expert said that ; the closest to what you want is probably $FREESURFER_HOME/subjects/fsaverage/surf/lh.aparc.label. You can open it with a text editor. Then you should cross-check with $FREESURFER_HOME/subjects/fsaverage/surf/lh.aparc.annot for the actual labels of those vertices. The .annot file can be opened in Matlab with the read_annotation command from FreeSurfer.


What do you recommend?
Ece

Gönderen: Bruce Fischl <fischl@nmr.mgh.harvard.edu> adına freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu>
Gönderildi: 5 Kasım 2018 Pazartesi 20:18
Kime: Freesurfer support list
Konu: Re: [Freesurfer] İlt: Desikan Atlas in volume space
 
Hi Ece

for a given subject the Desikan parcellation is sampled into the volume
alread in the file aparc+aseg.mgz in the subject's mri dir. Is that what
you are looking for?

cheers
Bruce

On Mon, 5 Nov 2018, ece ulug wrote:

>
>         External Email - Use Caution        
>
> Dear Experts,
>
>
> I am very beginner in Freesurfer, and I want to use 'read_annotation'
> function but i don't know what is the next step. I added the Matlab
> screenshoot. 
>
>
> Additionally; 'read_curv' function don't work in Matlab. I added it. 
>
>
> Thanks in advance
>
> Ece
>
>
>
>