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Thanks for sharing the CSV Akila. Could you also share what command you used to generate this CSV and the corresponding terminal output please?
I was not able to recreate this error on my end.

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Weerasekera, Akila,PHD <AWEERASEKERA@mgh.harvard.edu>
Sent: Tuesday, October 3, 2023 9:20 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] SynthSeg volume labels
 

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Thanks Eugenio! csv attached...

I source:


best,
Akila



Akila Weerasekera, PhD | Postdoctoral Research Fellow


Maria Mody lab for Developmental Language and Reading Research Laboratory |

Eva Ratai Lab for Clinical Spectroscopy |

Garry Nolan Lab (Stanford University) |


Harvard Medical School A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA


Mobile: (781) 820 4501

aweerasekera@mgh.harvard.edu 

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be www.nmr.mgh.harvard.edu





From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Juan E. <JIGLESIASGONZALEZ@mgh.harvard.edu>
Sent: Tuesday, October 3, 2023 8:52 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] SynthSeg volume labels
 

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Thanks, this is super weird. When did you download this dev version? Also: would it be possible to share the CSV file, please?

Cheers,

/Eugenio

 

--

Juan Eugenio Iglesias

http://www.jeiglesias.com

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Weerasekera, Akila,PHD <AWEERASEKERA@mgh.harvard.edu>
Date: Tuesday, October 3, 2023 at 7:01 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] SynthSeg volume labels

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Hi,

 

Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command?

 

 

Thank you,

Akila

 

Akila Weerasekera, PhD | Postdoctoral Research Fellow

 

Maria Mody lab for Developmental Language and Reading Research Laboratory |

Eva Ratai Lab for Clinical Spectroscopy |

Garry Nolan Lab (Stanford University) |

 

Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA

 

Mobile: (781) 820 4501

aweerasekera@mgh.harvard.edu 

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be www.nmr.mgh.harvard.edu