Hi FreeSurfer team,

 

Here are the details regarding the versions of FreeSurfer that my team are using: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0

 

I have a couple of questions regarding editing.

 

1. Whilst editing one brain we discovered a small hole (see just above the cursor on Screenshot 1). Does this require any manual editing? If so, what would you recommend we do?
2. We are working with brains that were scanned at multiple sites. FreeSurfer seems to have a problem segmenting around the ventricles (see Screenshot 2) with a number of brains from one of the sites. Is this an issue that requires manual editing and if so, what do you recommend we do?

 

If you need any further information, please let me know. Thank you in advance for any advice you can offer.

 

Harriet

PhD Student | University of Bath