Dear FreeSurfer Experts,

I am writing to kindly follow-up on my below query. Is there any chance you could assist me?

Thank you.

Kind regards,

Flavia

From: "f.loreto@imperial.ac.uk" <f.loreto@imperial.ac.uk>
Date: Monday, 18 January 2021 at 13:19
To: "Freesurfer@nmr.mgh.harvard.edu" <Freesurfer@nmr.mgh.harvard.edu>
Subject: Recon-all error: CTABWriteFileASCII; could not open file for writing

Dear FreeSurfer Experts,

Version: FreeSurfer 7.0

Platform: Bash remotely through High Performance Computing (HPC) on a MacOS Mojave

We are trying to run recon-all on T1 images but the job stops with the following error:

Reading annotation /rds/general/project/imperialapc/live/freesurfer/APC001/label/lh.aparc.annot

reading colortable from annotation file...

colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)

Seg base 1000

error: Permission denied

error: CTABwriteFileASCII(/tmp/mri_segstats.tmp.APC001.lh.176.ctab): could not open for writing

Could you please help us figuring out where is the problem? I am attaching the script we are running and the recon-all log for one of our analysed subjects.

Thank you for your help.

Kind regards,

Flavia