Hello experts,

I've been having some trouble with the talairach during recon. I followed previous instructions and checked the rawavg image and found that it was in wrongly oriented.
The sagittal picture was appearing under coronal but upsidedown, the coronal picture was sideways in the transverse section and the transverse was in the sagital section. I wonder if there is a place where I can send the data for someone to see and tell me how exaclty to flip the orientation of it to suit FreeSurfer.

I would also like to know whether there is a shorter way of processing the data for only mri-stats without running recon-all for all the subjects' data we have.

Thank you

Jan

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