Hello FreeSurfer Developers,

 

We are attempting to run the command recon-all on pediatric MRI images (1-13 yrs), as described on your website:

cmd=”recon-all -i $Dir/*.nii.gz -s sub02_test  -all”

 

The command worked well for some of our subjects. For others, however, hard failures occurred and recon-all did not finish or we received the following error (please find the recon-all.log attached):

“recon-all -s sub02_reconall exited with ERRORS at….”

 

Would you have any recommendations on how to trouble-shoot these issues? We have attached the recon-all.log documents in case it's of any use.

 

1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c

2) Platform: Linux

4) recon-all.log: see attached.

 

We would very much appreciate your help!

 

Kind regards,

Nina Wilpert

 

 

 

Nina-Maria Wilpert | medical student
T +49 (0) 30 450559858 | M +49 (0) 15783851445
E nina-maria.wilpert@charite.de

Department of Neuropediatrics

Charité, Universitätsmedizin Berlin

Institute of Anatomy

University of Leipzig

Genetics and Development of the Cerebral Cortex

Hôpital Necker-Enfants malades & IMAGINE, Paris