The id is the value in the mask. So if it's a binary mask, use --id 1



John Gelburg wrote:

I am sorry, but I still struggle to make it work :(
Here is my syntax:
mri_cor2label --i my_Analyze_mask.nii --l ./freeSurferMask.label
I am getting "ERROR: must supply a label id" error message.
I do not have any label id, because it's my custom mask, which was created in the SPM.

On Fri, Apr 9, 2010 at 11:14 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:

   It will still work.

   from mri_cor2label --help :

   Note: the name of this program is a bit misleading as it will operate
   on anything readble by mri_convert (eg, mgz, mgh, nifti, bhdr,
   analyze, etc).


   John Gelburg wrote:

       thanks, but isn't COR volume and my ANALYZE image is not the
       same thing?

       On Fri, Apr 9, 2010 at 8:02 PM, Douglas N Greve
       <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
       <mailto:greve@nmr.mgh.harvard.edu
       <mailto:greve@nmr.mgh.harvard.edu>>> wrote:

          try mri_cor2label

          John Gelburg wrote:

              Hi,

              I have ANLYZE binary mask which I would like to convert to
              FreeSurfer labels. Is there any more automatic way to do it
              than loading it as an overlay and then selecting
       manually as a
              label?

              Thanks for help,
              John
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          --     Douglas N. Greve, Ph.D.
          MGH-NMR Center
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   --     Douglas N. Greve, Ph.D.
   MGH-NMR Center
   greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html