We are looking into all this. We’ll have updates soon.

Cheers,

/Eugenio

Juan Eugenio Iglesias

ERC Senior Research Fellow

Translational Imaging Group

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Eva Hilland <evahilland@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Wednesday, 31 January 2018 at 22:26
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] segmentHA_T2.sh

Dear freesurfer experts,

I have tried the dev version of Segmentation of hippocampal subfields and nuclei of the amygdala
for OSX el Capitan, downloaded today.
I did get an error message similar to a previous error I found on this mailing list:

https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2017-November/054973.html


I have pasted the hippocampal-subfields-T2.HippoAMYT1andT2.log below

Is this a matlab runtime problem?


Many thanks in advance

Eva

--------------------------------------------
#@# Hippocampal Subfields processing (T1+T2) left Wed Jan 31 22:36:38 CET 2018
------------------------------------------
Setting up environment variables
---
DYLD_LIBRARY_PATH is .:/Applications/freesurfer/MCRv84//runtime/maci64:/Applications/freesurfer/MCRv84//bin/maci64:/Applications/freesurfer/MCRv84//sys/os/maci64:
Invalid MEX-file '/tmp/MCR_4021793156/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64': dlopen(/tmp/MCR_4021793156/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64, 6): Symbol not found: __ZNKSt5ctypeIcE13_M_widen_initEv
Referenced from: /tmp/MCR_4021793156/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64 (which was built for Mac OS X 10.11)
Expected in: /usr/lib/libstdc++.6.dylib
in /tmp/MCR_4021793156/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64

Error in kvlClear (line 11)

Error in segmentSubjectT1T2_autoEstimateAlveusML (line 135)

MATLAB:invalidMEXFile
Darwin Evas-MacBook-Pro.local 15.5.0 Darwin Kernel Version 15.5.0: Tue Apr 19 18:36:36 PDT 2016; root:xnu-3248.50.21~8/RELEASE_X86_64 x86_64

T2 hippocampal subfields exited with ERRORS at Wed Jan 31 22:36:49 CET 2018