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i am working with pet images and after running recon-all i used the transformation .lta to move the pet image in the standard space (pet and mri are already in the same space). By looking at the segmentation template aparc+aseg i noticed there is a loot of gray matter not included in the segmentation.

Il giorno gio 27 mar 2025 alle ore 16:56 Douglas N. Greve <dgreve@mgh.harvard.edu> ha scritto:
I'm not sure what you mean. by itself mni152 is not a segmentation template. Or do you want to do the analysis in mni152 space? If so, why?

On 3/27/2025 10:17 AM, Davide Sabbadin wrote:

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Hi all,
Is there the possibility to perform the segmentation through recon-all using a different template, e.g. mni152?

Thanks,
Sabbadin Davide

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