Hello everybody,

Since I was corresponding with a few persons separetly, it required resending the same information to all of them.

So I am getting back to the general forum with my still unsolved problem.

To recap: when I run recaon-all pipeline as below:

[iwobohr@huxley FMRI]$ recon-all -autorecon1 -i NCVI-JR001TH_T1WIR_brain-conv.nii.gz
-subjid test -all -force

(with -autorecon1 option or without, similar situation occurs with -make option)

It fails to output many necessary files, including brainmask.mgz, and the error message upon the completion of the pipeline is as follows:

ERROR: nu_correct

recon-all exited with ERRORS at Thu May 28 12:06:45 BST 2009

I attach a more detailed log file.

I hope that now somebody will be able to help me :)

Many thanks in advance,

Iwo