does that file exist? CAn you send the full terminal output?


On 4/2/18 9:53 PM, Dave Yas wrote:

Hi,


I am running preproc-sess on one subject.

I got the following error after running preproc-sess:


Error: niiRead(): error reading from /Users/Studies/Directory/Study_Directory/sess01/bold/001/f.nii

My PWD: /Users/Studies/Directory/Study_Directory

My echo $SUBJECTS_DIR: /Applications/freesurfer/subjects

My command: preproc-sess -fsd bold -per-run -s -sess01 -fwhm 5

My directory hierarchy: ~/Directory/Study_Directory/sess01/bold & subjectname.text/001/f.nii & paradigm file (.par)
                                                                                                                                                       ~/002/f.nii & paradigm file

                                                                                                                                                       ~/003/f.nii & paradigm file


Any help on the above?

I searched the previous mailing list and found someone who had the same problem but didn't reach a solution!



Thank you in advance,


DWY




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