Hi Luis - Not sure if you've tried this already, but the instructions on the wiki should work regardless of what your default shell is, because trac-all will source the configuration file from within a c shell.

Best,
Anastasia.
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Alvarado,Luis R <luis.alvarado@louisville.edu>
Sent: Sunday, October 31, 2021 5:24 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] TRACULA configuration file for bash
 

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Hi FS and TRACULA experts,

I have a simple question. Do I need to replace:

setenv SUBJECTS_DIR $TUTORIAL_DATA/diffusion_tutorial/fs
with:

export SUBJECTS_DIR $TUTORIAL_DATA/diffusion_tutorial/fs
inside the TRACULA configuration file, if my shell is bash? or should I leave that alone?

Best,


Luis R. Alvarado
Graduate Student Fellow
Department of Anatomical Sciences and Neurobiology
University of Louisville
Kentucky Spinal Cord Injury Research Center
220 Abraham Flexner Way, Suite 1500
Louisville, KY 40202