Hello,<br><br>I just downloaded and installed Freesurfer onto a new computer, and after going through all the steps outlined on the download and installation page, I get the following error when trying to run recon-all:<br>
<br>sudo recon-all -s bert -all<br>FREESURFER_HOME: Undefined variable.<br><br><br>However, I have set an absolute path to FREESURFER_HOME:<br><br>-------- freesurfer-Darwin-leopard-i686-stable-pub-v5.0.0 --------<br>Setting up environment for FreeSurfer/FS-FAST (and FSL)<br>
FREESURFER_HOME   /usr/local/freesurfer<br>FSFAST_HOME       /usr/local/freesurfer/fsfast<br>FSF_OUTPUT_FORMAT nii<br>SUBJECTS_DIR      /usr/local/freesurfer/subjects<br>MNI_DIR           /usr/local/freesurfer/mni<br><br>
Any ideas on what is going on?  I would appreciate any feedback.<br><br><br>Thanks!<br><br>-Andrew<br><br><br>