Try removing the trailing slash (/) from the subject name after --annot

On 10/19/2021 9:24 AM, COLLEEN PLETCHER wrote:

External Email - Use Caution

I have attached a screenshot of the command line and terminal output.

Thanks,

Colleen

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <dgreve@mgh.harvard.edu>
Sent: Monday, October 18, 2021 9:52 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Local GI MRI_segstats error
please send your command line and terminal outout

On 10/11/2021 1:36 PM, COLLEEN PLETCHER wrote:
External Email - Use Caution

Hello,

I am trying to run mri_segstats for local GI indices. I am getting a file not found error for /tmp/mri_segstats.tmp.sub-1007_ses_01/.lh.176.ctab

I did not get an error message when running the recon-all -localGI command and I am using freesurfer version 7.1.1.

Any advice would be appreciated!

Thanks,

Colleen
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