Node: freesurfer
================

 Hierarchy : _bbreg0
 Exec ID : _bbreg0

Original Inputs
---------------

* args : <undefined>
* contrast_type : t2
* environ : {'SUBJECTS_DIR': '/data/pt_nmc002/TDMGB_FMRI_ReconAll/'}
* epi_mask : True
* ignore_exception : False
* init : fsl
* init_reg_file : <undefined>
* intermediate_file : <undefined>
* out_fsl_file : True
* out_reg_file : <undefined>
* reg_frame : <undefined>
* reg_middle_frame : <undefined>
* registered_file : True
* source_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/RealignUnwarp/mapflow/_RealignUnwarp0/meanusub-01_task-spespk_run-01_bold.nii
* spm_nifti : <undefined>
* subject_id : sub-01
* subjects_dir : /data/pt_nmc002/TDMGB_FMRI_ReconAll/
* terminal_output : stream

Execution Inputs
----------------

* args : <undefined>
* contrast_type : t2
* environ : {'SUBJECTS_DIR': '/data/pt_nmc002/TDMGB_FMRI_ReconAll/'}
* epi_mask : True
* ignore_exception : False
* init : fsl
* init_reg_file : <undefined>
* intermediate_file : <undefined>
* out_fsl_file : True
* out_reg_file : <undefined>
* reg_frame : <undefined>
* reg_middle_frame : <undefined>
* registered_file : True
* source_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii
* spm_nifti : <undefined>
* subject_id : sub-01
* subjects_dir : /data/pt_nmc002/TDMGB_FMRI_ReconAll/
* terminal_output : stream

Execution Outputs
-----------------

* min_cost_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.mincost
* out_fsl_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.mat
* out_reg_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat
* registered_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii

Runtime info
------------

* command : bbregister --t2 --epi-mask --init-fsl --fslmat /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.mat --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --o /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii --s sub-01
* duration : 107.72893
* hostname : marillion.cbs.mpg.de
* runtime_memory_gb : 0.0
* runtime_threads : 1

Terminal output
~~~~~~~~~~~~~~~

 stdout 2017-07-11T15:02:50.989413:
 stdout 2017-07-11T15:02:50.989413:
 stdout 2017-07-11T15:02:50.989413:
 stdout 2017-07-11T15:02:50.989413:
 stdout 2017-07-11T15:02:50.989413:$Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $
 stdout 2017-07-11T15:02:50.989413:$Id: fslregister,v 1.40 2016/02/12 21:43:15 zkaufman Exp $
 stdout 2017-07-11T15:02:50.989413:$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
 stdout 2017-07-11T15:02:50.989413:--------------------------------------
 stdout 2017-07-11T15:02:50.989413:--s sub-01 --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat --niters 1 --maxangle 90 --tmp /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov
 stdout 2017-07-11T15:02:50.989413:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/bin/bbregister --t2 --epi-mask --init-fsl --fslmat /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.mat --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --o /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii --s sub-01
 stdout 2017-07-11T15:02:50.989413:/data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0
 stdout 2017-07-11T15:02:50.989413:FREESURFER_HOME /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64
 stdout 2017-07-11T15:02:50.989413:Linux marillion 4.4.0-79-generic #100-Ubuntu SMP Wed May 17 19:58:14 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
 stdout 2017-07-11T15:02:50.989413:Linux marillion 4.4.0-79-generic #100-Ubuntu SMP Wed May 17 19:58:14 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
 stdout 2017-07-11T15:02:50.989413:Log file is /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.log
 stdout 2017-07-11T15:02:50.989413:Log file is /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat.fslregister.log
 stdout 2017-07-11T15:02:50.989413:TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
 stdout 2017-07-11T15:02:50.989413:Tue Jul 11 15:02:50 CEST 2017
 stdout 2017-07-11T15:02:50.989413:Tue Jul 11 15:02:50 CEST 2017
 stdout 2017-07-11T15:02:50.989413:cd /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0
 stdout 2017-07-11T15:02:50.989413:fslregister --s sub-01 --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat --niters 1 --maxangle 90 --tmp /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov
 stdout 2017-07-11T15:02:50.989413:i_ras = (-0.999475, -0.0196308, 0.0257888)
 stdout 2017-07-11T15:02:50.989413:j_ras = (0.0224196, -0.993373, 0.112727)
 stdout 2017-07-11T15:02:50.989413:k_ras = (0.023405, 0.113245, 0.993291)
 stdout 2017-07-11T15:02:50.989413:marillion
 stdout 2017-07-11T15:02:50.989413:mri_convert /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii
 stdout 2017-07-11T15:02:50.989413:mri_convert.bin /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii 
 stdout 2017-07-11T15:02:50.989413:nIters 1
 stdout 2017-07-11T15:02:50.989413:reading from /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii...
 stdout 2017-07-11T15:02:50.989413:setenv SUBJECTS_DIR /data/pt_nmc002/TDMGB_FMRI_ReconAll/
 stdout 2017-07-11T15:02:50.989413:tmp /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094
 stdout 2017-07-11T15:02:50.989413:writing to /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii...
 stdout 2017-07-11T15:02:51.494205:mri_convert /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/mri/brainmask.mgz /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/refvol.fslregister.nii
 stdout 2017-07-11T15:02:51.494205:mri_convert.bin /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/mri/brainmask.mgz /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/refvol.fslregister.nii 
 stdout 2017-07-11T15:02:51.995426:$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
 stdout 2017-07-11T15:02:51.995426:--------------------------------------
 stdout 2017-07-11T15:02:51.995426:/data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0
 stdout 2017-07-11T15:02:51.995426:TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
 stdout 2017-07-11T15:02:51.995426:i_ras = (-1, 0, 0)
 stdout 2017-07-11T15:02:51.995426:j_ras = (0, 0, -1)
 stdout 2017-07-11T15:02:51.995426:k_ras = (0, 1, 0)
 stdout 2017-07-11T15:02:51.995426:mri_convert /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii --frame 0
 stdout 2017-07-11T15:02:51.995426:reading from /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/mri/brainmask.mgz...
 stdout 2017-07-11T15:02:51.995426:writing to /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/refvol.fslregister.nii...
 stdout 2017-07-11T15:02:52.498218: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:02:52.498218: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:02:52.498218: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:02:52.498218: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:02:52.498218: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:02:52.498218: 0.00000   0.00000   1.00000  -128.00000;
 stdout 2017-07-11T15:02:52.498218: 0.00000   0.00000   1.10000  -15.40001;
 stdout 2017-07-11T15:02:52.498218: 0.00000   1.00000   0.00000   0.00002;
 stdout 2017-07-11T15:02:52.498218: 0.00000  -1.00000   0.00000   128.00000;
 stdout 2017-07-11T15:02:52.498218: 0.00000  -1.10000   0.00000   66.00001;
 stdout 2017-07-11T15:02:52.498218: 0.02340   0.11325   0.99329   0.00002;
 stdout 2017-07-11T15:02:52.498218: 0.02340   0.11325   0.99329   0.00002;
 stdout 2017-07-11T15:02:52.498218: 0.99947   0.01963  -0.02579   1.10000;
 stdout 2017-07-11T15:02:52.498218: 0.99947   0.01963  -0.02579   1.10000;
 stdout 2017-07-11T15:02:52.498218:$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
 stdout 2017-07-11T15:02:52.498218:$Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $
 stdout 2017-07-11T15:02:52.498218:---- Input registration matrix (computed) --------
 stdout 2017-07-11T15:02:52.498218:---- Input registration matrix --------
 stdout 2017-07-11T15:02:52.498218:---------------------------------------
 stdout 2017-07-11T15:02:52.498218:-0.00000   0.00000   1.00000   0.00002;
 stdout 2017-07-11T15:02:52.498218:-0.02242   0.99337  -0.11273   0.00002;
 stdout 2017-07-11T15:02:52.498218:-0.02242   0.99337  -0.11273   0.00002;
 stdout 2017-07-11T15:02:52.498218:-1.00000   0.00000   0.00000   128.00000;
 stdout 2017-07-11T15:02:52.498218:-1.00000   0.00000  -0.00000   1.10001;
 stdout 2017-07-11T15:02:52.498218:-1.10000   0.00000   0.00000   65.99999;
 stdout 2017-07-11T15:02:52.498218:/data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0
 stdout 2017-07-11T15:02:52.498218:Computing reg from header (and possibly input matrix)
 stdout 2017-07-11T15:02:52.498218:Determinant -1
 stdout 2017-07-11T15:02:52.498218:Diagnostic Level -1
 stdout 2017-07-11T15:02:52.498218:INFO: loading movable /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii
 stdout 2017-07-11T15:02:52.498218:INFO: loading target /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii
 stdout 2017-07-11T15:02:52.498218:INFO: no target volume specified, assuming FreeSurfer orig volume.
 stdout 2017-07-11T15:02:52.498218:INFO: target does not conform to COR format, so I'm going to
 stdout 2017-07-11T15:02:52.498218:LoadVol        0
 stdout 2017-07-11T15:02:52.498218:Mov determinant is 1.331
 stdout 2017-07-11T15:02:52.498218:RegMat ---------------------------
 stdout 2017-07-11T15:02:52.498218:Swapping dims for pos det
 stdout 2017-07-11T15:02:52.498218:TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
 stdout 2017-07-11T15:02:52.498218:Tmov: --------------------
 stdout 2017-07-11T15:02:52.498218:Ttarg: --------------------
 stdout 2017-07-11T15:02:52.498218:WARNING:: Flipping Left/Right orientation (as det < 0)
 stdout 2017-07-11T15:02:52.498218:ZeroCRAS       0
 stdout 2017-07-11T15:02:52.498218:i_ras = (-0.999475, -0.0196308, 0.0257888)
 stdout 2017-07-11T15:02:52.498218:j_ras = (0.0224196, -0.993373, 0.112727)
 stdout 2017-07-11T15:02:52.498218:k_ras = (0.023405, 0.113245, 0.993291)
 stdout 2017-07-11T15:02:52.498218:keeping frame 0
 stdout 2017-07-11T15:02:52.498218:mkheaderreg = 1, float2int = 0
 stdout 2017-07-11T15:02:52.498218:movable volume /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii
 stdout 2017-07-11T15:02:52.498218:mri_convert.bin /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii --frame 0 
 stdout 2017-07-11T15:02:52.498218:reading from /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii...
 stdout 2017-07-11T15:02:52.498218:reg file       /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/swapreg.dat
 stdout 2017-07-11T15:02:52.498218:reslice to COR. This will not affect the final registration.
 stdout 2017-07-11T15:02:52.498218:subject = subject-unknown
 stdout 2017-07-11T15:02:52.498218:target  volume /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii
 stdout 2017-07-11T15:02:52.498218:target  volume orig
 stdout 2017-07-11T15:02:52.498218:tkregister2_cmdl --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/reg0.1908261.dat --regheader --fslregout /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat.fsl.mat0 --s sub-01 --noedit
 stdout 2017-07-11T15:02:52.498218:tkregister_tcl /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/tktools/tkregister2.tcl
 stdout 2017-07-11T15:02:52.498218:tkregister_tcl /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/tktools/tkregister2.tcl
 stdout 2017-07-11T15:02:52.498218:writing to /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii...
 stdout 2017-07-11T15:02:53.008497: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:02:53.008497: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:02:53.008497: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:02:53.008497: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:02:53.008497: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:02:53.008497: 0.00000   0.00000   1.00000  -128.00000;
 stdout 2017-07-11T15:02:53.008497: 0.00000   0.00000   1.10000  -15.40001;
 stdout 2017-07-11T15:02:53.008497: 0.00000  -1.00000   0.00000   128.00000;
 stdout 2017-07-11T15:02:53.008497: 0.00000  -1.10000   0.00000   66.00001;
 stdout 2017-07-11T15:02:53.008497: 0.02340   0.11325   0.99329  -14.29306;
 stdout 2017-07-11T15:02:53.008497: 0.02340   0.11325   0.99329  -14.29306;
 stdout 2017-07-11T15:02:53.008497: 0.02340   0.11325   0.99329  -14.29306;
 stdout 2017-07-11T15:02:53.008497:$Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $
 stdout 2017-07-11T15:02:53.008497:---- Input registration matrix (computed) --------
 stdout 2017-07-11T15:02:53.008497:---- Input registration matrix --------
 stdout 2017-07-11T15:02:53.008497:---------------------------------------
 stdout 2017-07-11T15:02:53.008497:-0.02242   0.99337  -0.11273   20.35101;
 stdout 2017-07-11T15:02:53.008497:-0.02242   0.99337  -0.11273   20.35101;
 stdout 2017-07-11T15:02:53.008497:-0.02242   0.99337  -0.11273   20.35101;
 stdout 2017-07-11T15:02:53.008497:-0.99947  -0.01963   0.02579   2.47648;
 stdout 2017-07-11T15:02:53.008497:-0.99947  -0.01963   0.02579   2.47648;
 stdout 2017-07-11T15:02:53.008497:-0.99947  -0.01963   0.02579   2.47648;
 stdout 2017-07-11T15:02:53.008497:-1.00000   0.00000   0.00000   128.00000;
 stdout 2017-07-11T15:02:53.008497:-1.10000   0.00000   0.00000   65.99999;
 stdout 2017-07-11T15:02:53.008497:/data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0
 stdout 2017-07-11T15:02:53.008497:Computing reg from header (and possibly input matrix)
 stdout 2017-07-11T15:02:53.008497:Determinant 1
 stdout 2017-07-11T15:02:53.008497:Diagnostic Level -1
 stdout 2017-07-11T15:02:53.008497:FSLOUTPUTTYPE NIFTI 
 stdout 2017-07-11T15:02:53.008497:INFO: loading movable /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii
 stdout 2017-07-11T15:02:53.008497:INFO: loading target /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/mri/orig.mgz
 stdout 2017-07-11T15:02:53.008497:LoadVol        0
 stdout 2017-07-11T15:02:53.008497:RegMat ---------------------------
 stdout 2017-07-11T15:02:53.008497:Tmov: --------------------
 stdout 2017-07-11T15:02:53.008497:Ttarg: --------------------
 stdout 2017-07-11T15:02:53.008497:Tue Jul 11 15:02:52 CEST 2017
 stdout 2017-07-11T15:02:53.008497:ZeroCRAS       0
 stdout 2017-07-11T15:02:53.008497:flirt.fsl -ref /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/refvol.fslregister.nii -in /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/fslmat0.trans.mat -schedule /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/bin/fsl.5.0.2.xyztrans.sch -init /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat.fsl.mat0
 stdout 2017-07-11T15:02:53.008497:mkheaderreg = 1, float2int = 0
 stdout 2017-07-11T15:02:53.008497:movable volume /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii
 stdout 2017-07-11T15:02:53.008497:reg file       /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/reg0.1908261.dat
 stdout 2017-07-11T15:02:53.008497:subject = sub-01
 stdout 2017-07-11T15:02:53.008497:tkreg2FSL: mov det = -1.331, ref det = -1
 stdout 2017-07-11T15:03:00.665439:/data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0
 stdout 2017-07-11T15:03:00.665439:Tue Jul 11 15:03:00 CEST 2017
 stdout 2017-07-11T15:03:00.665439:flirt.fsl -ref /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/refvol.fslregister.nii -in /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat.fsl.mat -init /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/fslmat0.trans.mat -schedule /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/bin/flirt.newdefault.20080811.sch
 stdout 2017-07-11T15:03:08.828315: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:03:08.828315: 0.12166  -0.27817  -0.95280   157.15800;
 stdout 2017-07-11T15:03:08.828315:---- FSL registration matrix --------
 stdout 2017-07-11T15:03:08.828315:-0.06517  -0.96009   0.27198   168.27499;
 stdout 2017-07-11T15:03:08.828315:-0.99043   0.02900  -0.13494   194.83000;
 stdout 2017-07-11T15:03:08.828315:tkregister2_cmdl --s sub-01 --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat --fslreg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat.fsl.mat --noedit
 stdout 2017-07-11T15:03:08.828315:tkregister_tcl /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/tktools/tkregister2.tcl
 stdout 2017-07-11T15:03:09.330388:
 stdout 2017-07-11T15:03:09.330388:
 stdout 2017-07-11T15:03:09.330388: 
 stdout 2017-07-11T15:03:09.330388: 
 stdout 2017-07-11T15:03:09.330388: 
 stdout 2017-07-11T15:03:09.330388: 
 stdout 2017-07-11T15:03:09.330388: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:03:09.330388: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:03:09.330388: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:03:09.330388: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:03:09.330388: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:03:09.330388: 0.00000   0.00000   1.00000  -128.00000;
 stdout 2017-07-11T15:03:09.330388: 0.00000   0.00000   1.10000  -15.40001;
 stdout 2017-07-11T15:03:09.330388: 0.00000  -1.00000   0.00000   128.00000;
 stdout 2017-07-11T15:03:09.330388: 0.00000  -1.10000   0.00000   66.00001;
 stdout 2017-07-11T15:03:09.330388: 0.02900   0.96009  -0.27817   21.15945;
 stdout 2017-07-11T15:03:09.330388: 0.02900   0.96009  -0.27817   21.15945;
 stdout 2017-07-11T15:03:09.330388: 0.02900   0.96009  -0.27817   21.15945;
 stdout 2017-07-11T15:03:09.330388: 0.13494   0.27198   0.95280   10.44553;
 stdout 2017-07-11T15:03:09.330388: 0.13494   0.27198   0.95280   10.44553;
 stdout 2017-07-11T15:03:09.330388: 0.13494   0.27198   0.95280   10.44553;
 stdout 2017-07-11T15:03:09.330388:$Id: mri_segreg.c,v 1.113 2016/05/10 03:23:20 greve Exp $
 stdout 2017-07-11T15:03:09.330388:$Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $
 stdout 2017-07-11T15:03:09.330388:---- Input registration matrix (computed) --------
 stdout 2017-07-11T15:03:09.330388:---- Input registration matrix --------
 stdout 2017-07-11T15:03:09.330388:---------------------------------------
 stdout 2017-07-11T15:03:09.330388:---------------------------------------
 stdout 2017-07-11T15:03:09.330388:-0.99043   0.06517   0.12166   0.73251;
 stdout 2017-07-11T15:03:09.330388:-0.99043   0.06517   0.12166   0.73251;
 stdout 2017-07-11T15:03:09.330388:-0.99043   0.06517   0.12166   0.73251;
 stdout 2017-07-11T15:03:09.330388:-1.00000   0.00000   0.00000   128.00000;
 stdout 2017-07-11T15:03:09.330388:-1.10000   0.00000   0.00000   65.99999;
 stdout 2017-07-11T15:03:09.330388:Determinant 1
 stdout 2017-07-11T15:03:09.330388:Diagnostic Level -1
 stdout 2017-07-11T15:03:09.330388:Ended   at Tue Jul 11 15:03:09 CEST 2017
 stdout 2017-07-11T15:03:09.330388:FSLOUTPUTTYPE NIFTI 
 stdout 2017-07-11T15:03:09.330388:INFO: loading movable /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii
 stdout 2017-07-11T15:03:09.330388:INFO: loading target /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/mri/orig.mgz
 stdout 2017-07-11T15:03:09.330388:INFO: no target volume specified, assuming FreeSurfer orig volume.
 stdout 2017-07-11T15:03:09.330388:LoadVol        0
 stdout 2017-07-11T15:03:09.330388:RegMat ---------------------------
 stdout 2017-07-11T15:03:09.330388:Started at Tue Jul 11 15:02:50 CEST 2017 
 stdout 2017-07-11T15:03:09.330388:Tmov: --------------------
 stdout 2017-07-11T15:03:09.330388:To check results, run:
 stdout 2017-07-11T15:03:09.330388:Ttarg: --------------------
 stdout 2017-07-11T15:03:09.330388:WARNING: possible left-right reversal
 stdout 2017-07-11T15:03:09.330388:ZeroCRAS       0
 stdout 2017-07-11T15:03:09.330388:cd /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0
 stdout 2017-07-11T15:03:09.330388:fsl2TkReg: mov det = -1.331, ref det = -1
 stdout 2017-07-11T15:03:09.330388:fslregister Done
 stdout 2017-07-11T15:03:09.330388:mkheaderreg = 0, float2int = 0
 stdout 2017-07-11T15:03:09.330388:movable volume /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/movvol.fslregister.nii
 stdout 2017-07-11T15:03:09.330388:mri_matrix_multiply -im /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/fslregister/swapreg.dat -im /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat -om /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat
 stdout 2017-07-11T15:03:09.330388:mri_segreg --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii --init-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat --out-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 --mask
 stdout 2017-07-11T15:03:09.330388:reg file       /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat
 stdout 2017-07-11T15:03:09.330388:setenv SUBJECTS_DIR /data/pt_nmc002/TDMGB_FMRI_ReconAll/
 stdout 2017-07-11T15:03:09.330388:subject = sub-01
 stdout 2017-07-11T15:03:09.330388:target  volume orig
 stdout 2017-07-11T15:03:09.330388:tkregister2 --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat --surf orig
 stdout 2017-07-11T15:03:09.838214:
 stdout 2017-07-11T15:03:09.838214: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:03:09.838214: 0.02900   0.96009  -0.27817   21.15947;
 stdout 2017-07-11T15:03:09.838214: 0.13494   0.27198   0.95280   10.44554;
 stdout 2017-07-11T15:03:09.838214: 0.99043  -0.06517  -0.12166   0.36749;
 stdout 2017-07-11T15:03:09.838214:AddNoise  0 (0)
 stdout 2017-07-11T15:03:09.838214:GMProjFrac 0.500000
 stdout 2017-07-11T15:03:09.838214:Gdiag_no  -1
 stdout 2017-07-11T15:03:09.838214:Input reg
 stdout 2017-07-11T15:03:09.838214:PenaltyCenter 0.000000
 stdout 2017-07-11T15:03:09.838214:PenaltySign  -1
 stdout 2017-07-11T15:03:09.838214:PenaltySlope 0.500000
 stdout 2017-07-11T15:03:09.838214:Profile   0
 stdout 2017-07-11T15:03:09.838214:RotRandMax 0.000000
 stdout 2017-07-11T15:03:09.838214:Rotations   0.000000 0.000000 0.000000
 stdout 2017-07-11T15:03:09.838214:SynthSeed 1499813886
 stdout 2017-07-11T15:03:09.838214:TolPowell 0.000100
 stdout 2017-07-11T15:03:09.838214:TransRandMax 0.000000
 stdout 2017-07-11T15:03:09.838214:Translations 0.000000 0.000000 0.000000
 stdout 2017-07-11T15:03:09.838214:UseLH 1
 stdout 2017-07-11T15:03:09.838214:UseMask 1
 stdout 2017-07-11T15:03:09.838214:UseRH 1
 stdout 2017-07-11T15:03:09.838214:WMProjAbs 2.000000
 stdout 2017-07-11T15:03:09.838214:dof 6
 stdout 2017-07-11T15:03:09.838214:frame  0
 stdout 2017-07-11T15:03:09.838214:hostname marillion
 stdout 2017-07-11T15:03:09.838214:interp  trilinear (1)
 stdout 2017-07-11T15:03:09.838214:lhcostfile (null)
 stdout 2017-07-11T15:03:09.838214:machine  x86_64
 stdout 2017-07-11T15:03:09.838214:movvol /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii
 stdout 2017-07-11T15:03:09.838214:mri_segreg --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii --init-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat --out-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 --mask 
 stdout 2017-07-11T15:03:09.838214:n1dmin  3
 stdout 2017-07-11T15:03:09.838214:nMaxItersPowell 36
 stdout 2017-07-11T15:03:09.838214:nsubsamp 100
 stdout 2017-07-11T15:03:09.838214:outregfile /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/bbr.pass1.dat
 stdout 2017-07-11T15:03:09.838214:regfile /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.init.dat
 stdout 2017-07-11T15:03:09.838214:rhcostfile (null)
 stdout 2017-07-11T15:03:09.838214:subject sub-01
 stdout 2017-07-11T15:03:09.838214:surfname white
 stdout 2017-07-11T15:03:09.838214:sysname  Linux
 stdout 2017-07-11T15:03:09.838214:user     mihai
 stdout 2017-07-11T15:03:13.921112:Loading lh.thickness for GM
 stdout 2017-07-11T15:03:13.921112:Loading lh.white surf
 stdout 2017-07-11T15:03:13.921112:Loading mov
 stdout 2017-07-11T15:03:13.921112:Projecting LH Surfs
 stdout 2017-07-11T15:03:14.422542:GM Proj: 1 0.500000 2.000000
 stdout 2017-07-11T15:03:14.422542:Reading /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/label/lh.aparc.annot
 stdout 2017-07-11T15:03:14.422542:WM Proj: 0 0.500000 2.000000
 stdout 2017-07-11T15:03:14.422542:colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
 stdout 2017-07-11T15:03:14.422542:reading colortable from annotation file...
 stdout 2017-07-11T15:03:17.989484:Loading rh.thickness for GM
 stdout 2017-07-11T15:03:17.989484:Loading rh.white surf
 stdout 2017-07-11T15:03:17.989484:Projecting RH Surfs
 stdout 2017-07-11T15:03:17.989484:Projecting RH Surfs
 stdout 2017-07-11T15:03:17.989484:Reading /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/label/rh.aparc.annot
 stdout 2017-07-11T15:03:17.989484:colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
 stdout 2017-07-11T15:03:17.989484:reading colortable from annotation file...
 stdout 2017-07-11T15:03:18.491484:
 stdout 2017-07-11T15:03:18.491484:     0  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000      0.9937   0.9937  0.0
 stdout 2017-07-11T15:03:18.491484:     4  -4.0000  -4.0000  -4.0000  -4.0000   0.0000   0.0000      0.9541   0.9541  0.0
 stdout 2017-07-11T15:03:18.491484:    37  -4.0000  -4.0000   0.0000   0.0000  -4.0000   0.0000      0.9382   0.9382  0.0
 stdout 2017-07-11T15:03:18.491484:    54  -4.0000  -4.0000   4.0000  -4.0000  -4.0000  -4.0000      0.8706   0.8706  0.0
 stdout 2017-07-11T15:03:18.491484: 0  -25.0 -25.0 -25.0   0.958584
 stdout 2017-07-11T15:03:18.491484: 1  -25.0 -25.0  25.0   1.115319
 stdout 2017-07-11T15:03:18.491484: 2  -25.0  25.0 -25.0   0.971735
 stdout 2017-07-11T15:03:18.491484: 3  -25.0  25.0  25.0   1.050847
 stdout 2017-07-11T15:03:18.491484: 4   25.0 -25.0 -25.0   1.073607
 stdout 2017-07-11T15:03:18.491484: 5   25.0 -25.0  25.0   1.026591
 stdout 2017-07-11T15:03:18.491484: 6   25.0  25.0 -25.0   1.093119
 stdout 2017-07-11T15:03:18.491484: 7   25.0  25.0  25.0   1.059528
 stdout 2017-07-11T15:03:18.491484:------------------------------------
 stdout 2017-07-11T15:03:18.491484:Brute force preopt -4 4 4, n = 729
 stdout 2017-07-11T15:03:18.491484:Computing relative cost
 stdout 2017-07-11T15:03:18.491484:Cost   0.9473
 stdout 2017-07-11T15:03:18.491484:Ctx Intensity  1478.0208 +/- 344.0118
 stdout 2017-07-11T15:03:18.491484:Initial costs ----------------
 stdout 2017-07-11T15:03:18.491484:Number of surface hits 334
 stdout 2017-07-11T15:03:18.491484:Pct Contrast      1.8392 +/-  22.4137
 stdout 2017-07-11T15:03:18.491484:REL:  8  0.947309    8.349331  1.043666 rel = 0.907674 
 stdout 2017-07-11T15:03:18.491484:RelCost   0.9077
 stdout 2017-07-11T15:03:18.491484:Using lh.cortex.label
 stdout 2017-07-11T15:03:18.491484:Using rh.cortex.label
 stdout 2017-07-11T15:03:18.491484:WM  Intensity  1462.3614 +/- 359.7528
 stdout 2017-07-11T15:03:18.996072:   390   0.0000   0.0000   4.0000   0.0000   0.0000  -4.0000      0.8524   0.8524  0.0
 stdout 2017-07-11T15:03:18.996072:   462   0.0000   4.0000   4.0000  -4.0000   0.0000  -4.0000      0.7897   0.7897  0.0
 stdout 2017-07-11T15:03:19.497250:
 stdout 2017-07-11T15:03:19.497250:   6  0.382  4.000  4.000 -4.000  0.000 -4.000   0.7808599413
 stdout 2017-07-11T15:03:19.497250:   9  0.472  4.000  4.000 -4.000  0.000 -4.000   0.7806644043
 stdout 2017-07-11T15:03:19.497250:  0.000   4.000   4.000 -4.000  0.000 -4.000 
 stdout 2017-07-11T15:03:19.497250:  15  0.465  4.000  4.000 -4.000  0.000 -4.000   0.7806181589
 stdout 2017-07-11T15:03:19.497250:  28  0.465  4.004  4.000 -4.000  0.000 -4.000   0.7805406059
 stdout 2017-07-11T15:03:19.497250:  29  0.465  4.008  4.000 -4.000  0.000 -4.000   0.7805107705
 stdout 2017-07-11T15:03:19.497250:  30  0.465  4.009  4.000 -4.000  0.000 -4.000   0.7805103560
 stdout 2017-07-11T15:03:19.497250:  ftol   0.000100
 stdout 2017-07-11T15:03:19.497250:  linmin_xtol_   0.001000
 stdout 2017-07-11T15:03:19.497250:  maxfev 36
 stdout 2017-07-11T15:03:19.497250:  nparams 6
 stdout 2017-07-11T15:03:19.497250:  powell nthiter 0: fret = 0.789674
 stdout 2017-07-11T15:03:19.497250:--------------------------------------------
 stdout 2017-07-11T15:03:19.497250:0 0
 stdout 2017-07-11T15:03:19.497250:1 4
 stdout 2017-07-11T15:03:19.497250:2 4
 stdout 2017-07-11T15:03:19.497250:3 -4
 stdout 2017-07-11T15:03:19.497250:4 0
 stdout 2017-07-11T15:03:19.497250:5 -4
 stdout 2017-07-11T15:03:19.497250:Brute Force --------------------------
 stdout 2017-07-11T15:03:19.497250:Init Powel Params dof = 6
 stdout 2017-07-11T15:03:19.497250:Min cost was 0.789674
 stdout 2017-07-11T15:03:19.497250:Number of iterations   729
 stdout 2017-07-11T15:03:19.497250:Parameters at best (transmm, rotdeg)
 stdout 2017-07-11T15:03:19.497250:Search time 1.366000 sec
 stdout 2017-07-11T15:03:19.497250:Starting Powell Minimization
 stdout 2017-07-11T15:03:19.497250:fs_powell::minimize
 stdout 2017-07-11T15:03:20.002428:  39  0.465  4.009  3.954 -4.000  0.000 -4.000   0.7804880458
 stdout 2017-07-11T15:03:20.002428:  42  0.465  4.009  3.870 -4.000  0.000 -4.000   0.7744412709
 stdout 2017-07-11T15:03:20.002428:  44  0.465  4.009  3.902 -4.000  0.000 -4.000   0.7733740525
 stdout 2017-07-11T15:03:20.002428:  45  0.465  4.009  3.894 -4.000  0.000 -4.000   0.7733418190
 stdout 2017-07-11T15:03:20.002428:  46  0.465  4.009  3.897 -4.000  0.000 -4.000   0.7733294798
 stdout 2017-07-11T15:03:20.002428:  55  0.465  4.009  3.897 -4.016  0.000 -4.000   0.7733104042
 stdout 2017-07-11T15:03:20.002428:  56  0.465  4.009  3.897 -4.010  0.000 -4.000   0.7732835364
 stdout 2017-07-11T15:03:20.002428:  57  0.465  4.009  3.897 -4.009  0.000 -4.000   0.7732821894
 stdout 2017-07-11T15:03:20.002428:  58  0.465  4.009  3.897 -4.008  0.000 -4.000   0.7732818910
 stdout 2017-07-11T15:03:20.002428:  67  0.465  4.009  3.897 -4.008  0.087 -4.000   0.7722631568
 stdout 2017-07-11T15:03:20.002428:  69  0.465  4.009  3.897 -4.008  0.050 -4.000   0.7702399285
 stdout 2017-07-11T15:03:20.002428:  71  0.465  4.009  3.897 -4.008  0.051 -4.000   0.7702391660
 stdout 2017-07-11T15:03:20.002428:  79  0.465  4.009  3.897 -4.008  0.051 -3.993   0.7701240417
 stdout 2017-07-11T15:03:20.002428:  80  0.465  4.009  3.897 -4.008  0.051 -3.939   0.7694872081
 stdout 2017-07-11T15:03:20.002428:  83  0.465  4.009  3.897 -4.008  0.051 -3.960   0.7692546065
 stdout 2017-07-11T15:03:20.002428:  86  0.465  4.009  3.897 -4.008  0.051 -3.959   0.7692532293
 stdout 2017-07-11T15:03:20.002428:  97  0.464  4.009  3.897 -4.008  0.051 -3.959   0.7691986748
 stdout 2017-07-11T15:03:20.002428:  98  0.448  4.009  3.897 -4.008  0.051 -3.959   0.7687526779
 stdout 2017-07-11T15:03:20.002428:  powell nthiter 1: fret = 0.769253
 stdout 2017-07-11T15:03:20.002428:  powell nthiter 2: fret = 0.768373
 stdout 2017-07-11T15:03:20.002428:  powell nthiter 3: fret = 0.767533
 stdout 2017-07-11T15:03:20.002428: 125  0.448  4.009  3.901 -4.008  0.051 -3.959   0.7686765286
 stdout 2017-07-11T15:03:20.002428: 126  0.448  4.009  3.904 -4.008  0.051 -3.959   0.7686420548
 stdout 2017-07-11T15:03:20.002428: 139  0.448  4.009  3.904 -4.010  0.051 -3.959   0.7686413462
 stdout 2017-07-11T15:03:20.002428: 141  0.448  4.009  3.904 -4.009  0.051 -3.959   0.7686376870
 stdout 2017-07-11T15:03:20.002428: 151  0.448  4.009  3.904 -4.009  0.040 -3.959   0.7683920968
 stdout 2017-07-11T15:03:20.002428: 152  0.448  4.009  3.904 -4.009  0.038 -3.959   0.7683756552
 stdout 2017-07-11T15:03:20.002428: 166  0.448  4.009  3.904 -4.009  0.038 -3.960   0.7683733053
 stdout 2017-07-11T15:03:20.002428: 179  0.438  4.009  3.904 -4.009  0.038 -3.960   0.7681952327
 stdout 2017-07-11T15:03:20.002428: 193  0.438  4.013  3.904 -4.009  0.038 -3.960   0.7681469303
 stdout 2017-07-11T15:03:20.002428: 196  0.438  4.014  3.904 -4.009  0.038 -3.960   0.7681404738
 stdout 2017-07-11T15:03:20.002428: 209  0.438  4.014  3.906 -4.009  0.038 -3.960   0.7681346645
 stdout 2017-07-11T15:03:20.002428: 210  0.438  4.014  3.907 -4.009  0.038 -3.960   0.7681338895
 stdout 2017-07-11T15:03:20.002428: 220  0.438  4.014  3.907 -4.012  0.038 -3.960   0.7681268473
 stdout 2017-07-11T15:03:20.002428: 221  0.438  4.014  3.907 -4.011  0.038 -3.960   0.7681259070
 stdout 2017-07-11T15:03:20.002428: 232  0.438  4.014  3.907 -4.011  0.028 -3.960   0.7679789654
 stdout 2017-07-11T15:03:20.002428: 244  0.438  4.014  3.907 -4.011  0.028 -3.950   0.7679411354
 stdout 2017-07-11T15:03:20.002428: 247  0.428  4.018  3.910 -4.014  0.019 -3.941   0.7675737032
 stdout 2017-07-11T15:03:20.002428: 256  0.427  4.018  3.910 -4.014  0.018 -3.940   0.7675451196
 stdout 2017-07-11T15:03:20.002428: 259  0.427  4.018  3.910 -4.014  0.018 -3.940   0.7675391742
 stdout 2017-07-11T15:03:20.002428: 260  0.426  4.018  3.910 -4.014  0.018 -3.940   0.7675354462
 stdout 2017-07-11T15:03:20.002428: 263  0.426  4.018  3.910 -4.014  0.018 -3.940   0.7675338982
 stdout 2017-07-11T15:03:20.002428: 264  0.426  4.018  3.910 -4.014  0.018 -3.940   0.7675330079
 stdout 2017-07-11T15:03:20.002428: 276  0.426  4.018  3.910 -4.014  0.018 -3.941   0.7675286977
 stdout 2017-07-11T15:03:20.510381:  powell nthiter 4: fret = 0.767202
 stdout 2017-07-11T15:03:20.510381:  powell nthiter 5: fret = 0.766748
 stdout 2017-07-11T15:03:20.510381:  powell nthiter 6: fret = 0.766658
 stdout 2017-07-11T15:03:20.510381: 287  0.426  4.029  3.910 -4.014  0.018 -3.941   0.7673505477
 stdout 2017-07-11T15:03:20.510381: 289  0.426  4.027  3.910 -4.014  0.018 -3.941   0.7673392147
 stdout 2017-07-11T15:03:20.510381: 291  0.426  4.026  3.910 -4.014  0.018 -3.941   0.7673386419
 stdout 2017-07-11T15:03:20.510381: 329  0.426  4.026  3.910 -4.014  0.016 -3.941   0.7673259543
 stdout 2017-07-11T15:03:20.510381: 330  0.426  4.026  3.910 -4.014  0.013 -3.941   0.7673222649
 stdout 2017-07-11T15:03:20.510381: 333  0.426  4.026  3.910 -4.014  0.014 -3.941   0.7673216454
 stdout 2017-07-11T15:03:20.510381: 341  0.425  4.027  3.910 -4.015  0.013 -3.940   0.7672680957
 stdout 2017-07-11T15:03:20.510381: 342  0.424  4.027  3.911 -4.015  0.012 -3.939   0.7672329564
 stdout 2017-07-11T15:03:20.510381: 343  0.423  4.027  3.911 -4.015  0.012 -3.939   0.7672133622
 stdout 2017-07-11T15:03:20.510381: 344  0.423  4.027  3.911 -4.015  0.011 -3.938   0.7672019169
 stdout 2017-07-11T15:03:20.510381: 350  0.423  4.027  3.911 -4.015  0.011 -3.938   0.7672018872
 stdout 2017-07-11T15:03:20.510381: 361  0.423  4.027  3.911 -4.015  0.011 -3.928   0.7671664331
 stdout 2017-07-11T15:03:20.510381: 364  0.423  4.027  3.911 -4.015  0.011 -3.929   0.7671644133
 stdout 2017-07-11T15:03:20.510381: 374  0.423  4.036  3.911 -4.015  0.011 -3.929   0.7671242828
 stdout 2017-07-11T15:03:20.510381: 375  0.423  4.034  3.911 -4.015  0.011 -3.929   0.7671130029
 stdout 2017-07-11T15:03:20.510381: 376  0.423  4.033  3.911 -4.015  0.011 -3.929   0.7671126975
 stdout 2017-07-11T15:03:20.510381: 405  0.423  4.033  3.911 -4.016  0.011 -3.929   0.7671052353
 stdout 2017-07-11T15:03:20.510381: 415  0.423  4.033  3.911 -4.016  0.010 -3.929   0.7670992325
 stdout 2017-07-11T15:03:20.510381: 416  0.423  4.033  3.911 -4.016  0.008 -3.929   0.7670970174
 stdout 2017-07-11T15:03:20.510381: 427  0.421  4.033  3.911 -4.017  0.007 -3.927   0.7670415343
 stdout 2017-07-11T15:03:20.510381: 428  0.421  4.034  3.911 -4.017  0.006 -3.926   0.7670092657
 stdout 2017-07-11T15:03:20.510381: 429  0.420  4.034  3.912 -4.017  0.005 -3.926   0.7669878730
 stdout 2017-07-11T15:03:20.510381: 434  0.420  4.034  3.912 -4.017  0.005 -3.926   0.7669866566
 stdout 2017-07-11T15:03:20.510381: 436  0.420  4.034  3.912 -4.017  0.005 -3.926   0.7669865587
 stdout 2017-07-11T15:03:20.510381: 437  0.420  4.034  3.912 -4.017  0.005 -3.926   0.7669852988
 stdout 2017-07-11T15:03:20.510381: 438  0.417  4.040  3.912 -4.019 -0.001 -3.913   0.7668302408
 stdout 2017-07-11T15:03:20.510381: 441  0.412  4.051  3.914 -4.022 -0.011 -3.893   0.7667486917
 stdout 2017-07-11T15:03:20.510381: 452  0.412  4.051  3.914 -4.022 -0.011 -3.892   0.7667480039
 stdout 2017-07-11T15:03:20.510381: 465  0.412  4.051  3.914 -4.022 -0.011 -3.895   0.7667384854
 stdout 2017-07-11T15:03:20.510381: 467  0.412  4.051  3.914 -4.022 -0.011 -3.899   0.7667304620
 stdout 2017-07-11T15:03:20.510381: 469  0.412  4.051  3.914 -4.022 -0.011 -3.900   0.7667291316
 stdout 2017-07-11T15:03:20.510381: 481  0.412  4.046  3.914 -4.022 -0.011 -3.900   0.7666910050
 stdout 2017-07-11T15:03:20.510381: 506  0.412  4.046  3.914 -4.023 -0.011 -3.900   0.7666860609
 stdout 2017-07-11T15:03:20.510381: 526  0.409  4.053  3.915 -4.025 -0.017 -3.887   0.7666578277
 stdout 2017-07-11T15:03:20.510381: 552  0.409  4.053  3.915 -4.025 -0.017 -3.894   0.7666352193
 stdout 2017-07-11T15:03:20.510381: 554  0.409  4.053  3.915 -4.025 -0.017 -3.897   0.7666311177
 stdout 2017-07-11T15:03:20.510381: 555  0.409  4.053  3.915 -4.025 -0.017 -3.898   0.7666301132
 stdout 2017-07-11T15:03:20.510381: 556  0.409  4.053  3.915 -4.025 -0.017 -3.900   0.7666294344
 stdout 2017-07-11T15:03:20.510381: 558  0.409  4.053  3.915 -4.025 -0.017 -3.899   0.7666292829
 stdout 2017-07-11T15:03:21.016954:
 stdout 2017-07-11T15:03:21.016954:
 stdout 2017-07-11T15:03:21.016954:
 stdout 2017-07-11T15:03:21.016954: 0  -25.0 -25.0 -25.0   1.000034
 stdout 2017-07-11T15:03:21.016954: 0.00000   0.00000   0.00000   0.00000;
 stdout 2017-07-11T15:03:21.016954: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:03:21.016954: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:03:21.016954: 0.00924   0.02148   0.06622  -3.12942;
 stdout 2017-07-11T15:03:21.016954: 0.01976   0.93862  -0.34439   24.28888;
 stdout 2017-07-11T15:03:21.016954: 0.02900   0.96009  -0.27817   21.15947;
 stdout 2017-07-11T15:03:21.016954: 0.06596  -0.07038   0.01576  -5.45592;
 stdout 2017-07-11T15:03:21.016954: 0.06898   0.34236   0.93703   15.90146;
 stdout 2017-07-11T15:03:21.016954: 0.13494   0.27198   0.95280   10.44554;
 stdout 2017-07-11T15:03:21.016954: 0.99043  -0.06517  -0.12166   0.36749;
 stdout 2017-07-11T15:03:21.016954: 0.99742  -0.04227  -0.05798   1.57859;
 stdout 2017-07-11T15:03:21.016954: 1  -25.0 -25.0  25.0   0.916514
 stdout 2017-07-11T15:03:21.016954: 2  -25.0  25.0 -25.0   1.010468
 stdout 2017-07-11T15:03:21.016954: 3  -25.0  25.0  25.0   1.005660
 stdout 2017-07-11T15:03:21.016954: 4   25.0 -25.0 -25.0   0.951480
 stdout 2017-07-11T15:03:21.016954: 5   25.0 -25.0  25.0   1.040785
 stdout 2017-07-11T15:03:21.016954: 570  0.409  4.049  3.915 -4.025 -0.017 -3.899   0.7666065040
 stdout 2017-07-11T15:03:21.016954: 6   25.0  25.0 -25.0   1.056366
 stdout 2017-07-11T15:03:21.016954: 625  0.409  4.049  3.915 -4.025 -0.017 -3.899   0.7666061798
 stdout 2017-07-11T15:03:21.016954: 629  0.409  4.049  3.915 -4.025 -0.017 -3.899   0.7666060572
 stdout 2017-07-11T15:03:21.016954: 7   25.0  25.0  25.0   0.987284
 stdout 2017-07-11T15:03:21.016954:$Id: mri_segreg.c,v 1.113 2016/05/10 03:23:20 greve Exp $
 stdout 2017-07-11T15:03:21.016954:-0.00699  -0.02290  -0.06368  -1.21110;
 stdout 2017-07-11T15:03:21.016954:Computing change in lh position
 stdout 2017-07-11T15:03:21.016954:Computing change in rh position
 stdout 2017-07-11T15:03:21.016954:Computing relative cost
 stdout 2017-07-11T15:03:21.016954:Cost   0.7666
 stdout 2017-07-11T15:03:21.016954:Ctx Intensity  1419.9915 +/- 292.4582
 stdout 2017-07-11T15:03:21.016954:Final costs ----------------
 stdout 2017-07-11T15:03:21.016954:LH rmsDiffMean 7.213385
 stdout 2017-07-11T15:03:21.016954:Min cost was 0.766606
 stdout 2017-07-11T15:03:21.016954:Number of FunctionCalls   632
 stdout 2017-07-11T15:03:21.016954:Number of iterations     6
 stdout 2017-07-11T15:03:21.016954:Number of surface hits 311
 stdout 2017-07-11T15:03:21.016954:OptimizationTime 1.181000 sec
 stdout 2017-07-11T15:03:21.016954:Original Reg 
 stdout 2017-07-11T15:03:21.016954:Original Reg - Optimal Reg
 stdout 2017-07-11T15:03:21.016954:Parameters at optimum (rotdeg) -4.02455 -0.01720 -3.89873 
 stdout 2017-07-11T15:03:21.016954:Parameters at optimum (transmm)  0.40860  4.04874  3.91459
 stdout 2017-07-11T15:03:21.016954:Pct Contrast      3.5601 +/-  21.2254
 stdout 2017-07-11T15:03:21.016954:Powell done niters = 6
 stdout 2017-07-11T15:03:21.016954:REL:  8  0.766606    7.968592  0.996074 rel = 0.769628 
 stdout 2017-07-11T15:03:21.016954:Reg at min cost was 
 stdout 2017-07-11T15:03:21.016954:RelCost   0.9077
 stdout 2017-07-11T15:03:21.016954:Surface-RMS-Diff-mm 6.164953 2.376056 12.465209
 stdout 2017-07-11T15:03:21.016954:TolPowell 0.000100
 stdout 2017-07-11T15:03:21.016954:WM  Intensity  1378.5571 +/- 316.6339
 stdout 2017-07-11T15:03:21.016954:Writing optimal reg to /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/bbr.pass1.dat, type = 14 
 stdout 2017-07-11T15:03:21.016954:cd /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0
 stdout 2017-07-11T15:03:21.016954:mri_segreg --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii --init-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/bbr.pass1.dat --out-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.mincost --dof 6 --nmax 36 --param /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --mask --o /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii --gm-gt-wm 0.5
 stdout 2017-07-11T15:03:21.016954:mri_segreg done
 stdout 2017-07-11T15:03:21.016954:nMaxItersPowell 36
 stdout 2017-07-11T15:03:21.016954:setenv SUBJECTS_DIR /data/pt_nmc002/TDMGB_FMRI_ReconAll/
 stdout 2017-07-11T15:03:21.526419:
 stdout 2017-07-11T15:03:21.526419: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:03:21.526419: 0.01976   0.93862  -0.34439   24.28888;
 stdout 2017-07-11T15:03:21.526419: 0.06898   0.34236   0.93703   15.90146;
 stdout 2017-07-11T15:03:21.526419: 0.99742  -0.04227  -0.05798   1.57859;
 stdout 2017-07-11T15:03:21.526419:AddNoise  0 (0)
 stdout 2017-07-11T15:03:21.526419:GMProjFrac 0.500000
 stdout 2017-07-11T15:03:21.526419:Gdiag_no  -1
 stdout 2017-07-11T15:03:21.526419:Input reg
 stdout 2017-07-11T15:03:21.526419:PenaltyCenter 0.000000
 stdout 2017-07-11T15:03:21.526419:PenaltySign  -1
 stdout 2017-07-11T15:03:21.526419:PenaltySlope 0.500000
 stdout 2017-07-11T15:03:21.526419:Profile   0
 stdout 2017-07-11T15:03:21.526419:RotRandMax 0.000000
 stdout 2017-07-11T15:03:21.526419:Rotations   0.000000 0.000000 0.000000
 stdout 2017-07-11T15:03:21.526419:SynthSeed 1500615528
 stdout 2017-07-11T15:03:21.526419:TolPowell 0.000000
 stdout 2017-07-11T15:03:21.526419:TransRandMax 0.000000
 stdout 2017-07-11T15:03:21.526419:Translations 0.000000 0.000000 0.000000
 stdout 2017-07-11T15:03:21.526419:UseLH 1
 stdout 2017-07-11T15:03:21.526419:UseMask 1
 stdout 2017-07-11T15:03:21.526419:UseRH 1
 stdout 2017-07-11T15:03:21.526419:WMProjAbs 2.000000
 stdout 2017-07-11T15:03:21.526419:dof 6
 stdout 2017-07-11T15:03:21.526419:frame  0
 stdout 2017-07-11T15:03:21.526419:hostname marillion
 stdout 2017-07-11T15:03:21.526419:interp  trilinear (1)
 stdout 2017-07-11T15:03:21.526419:lhcostfile (null)
 stdout 2017-07-11T15:03:21.526419:machine  x86_64
 stdout 2017-07-11T15:03:21.526419:movvol /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii
 stdout 2017-07-11T15:03:21.526419:mri_segreg --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/template.nii --init-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/bbr.pass1.dat --out-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.mincost --dof 6 --nmax 36 --param /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --mask --o /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii --gm-gt-wm 0.5 
 stdout 2017-07-11T15:03:21.526419:n1dmin  3
 stdout 2017-07-11T15:03:21.526419:nMaxItersPowell 36
 stdout 2017-07-11T15:03:21.526419:nsubsamp 1
 stdout 2017-07-11T15:03:21.526419:outfile /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii
 stdout 2017-07-11T15:03:21.526419:outregfile /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat
 stdout 2017-07-11T15:03:21.526419:regfile /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/tmp.bbregister.1908094/bbr.pass1.dat
 stdout 2017-07-11T15:03:21.526419:rhcostfile (null)
 stdout 2017-07-11T15:03:21.526419:subject sub-01
 stdout 2017-07-11T15:03:21.526419:surfname white
 stdout 2017-07-11T15:03:21.526419:sysname  Linux
 stdout 2017-07-11T15:03:21.526419:user     mihai
 stdout 2017-07-11T15:03:26.119221:GM Proj: 1 0.500000 2.000000
 stdout 2017-07-11T15:03:26.119221:Loading lh.thickness for GM
 stdout 2017-07-11T15:03:26.119221:Loading lh.white surf
 stdout 2017-07-11T15:03:26.119221:Loading mov
 stdout 2017-07-11T15:03:26.119221:Projecting LH Surfs
 stdout 2017-07-11T15:03:26.119221:Reading /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/label/lh.aparc.annot
 stdout 2017-07-11T15:03:26.119221:WM Proj: 0 0.500000 2.000000
 stdout 2017-07-11T15:03:26.119221:colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
 stdout 2017-07-11T15:03:26.119221:reading colortable from annotation file...
 stdout 2017-07-11T15:03:30.197441:Loading rh.thickness for GM
 stdout 2017-07-11T15:03:30.197441:Loading rh.white surf
 stdout 2017-07-11T15:03:30.197441:Projecting RH Surfs
 stdout 2017-07-11T15:03:30.197441:Projecting RH Surfs
 stdout 2017-07-11T15:03:30.197441:Reading /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/label/rh.aparc.annot
 stdout 2017-07-11T15:03:30.197441:colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
 stdout 2017-07-11T15:03:30.197441:reading colortable from annotation file...
 stdout 2017-07-11T15:03:31.720527:
 stdout 2017-07-11T15:03:31.720527:
 stdout 2017-07-11T15:03:31.720527:
 stdout 2017-07-11T15:03:31.720527:
 stdout 2017-07-11T15:03:31.720527:
 stdout 2017-07-11T15:03:31.720527:     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.7985   0.7985  0.0
 stdout 2017-07-11T15:03:31.720527:     1  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000   0.0000      0.7966   0.7966  0.0
 stdout 2017-07-11T15:03:31.720527:     4  -0.1000  -0.1000  -0.1000  -0.1000   0.0000   0.0000      0.7957   0.7957  0.0
 stdout 2017-07-11T15:03:31.720527:     8  -0.1000  -0.1000  -0.1000  -0.1000   0.1000   0.1000      0.7952   0.7952  0.0
 stdout 2017-07-11T15:03:31.720527:     9  -0.1000  -0.1000  -0.1000   0.0000  -0.1000  -0.1000      0.7875   0.7875  0.0
 stdout 2017-07-11T15:03:31.720527:    10  -0.1000  -0.1000  -0.1000   0.0000  -0.1000   0.0000      0.7843   0.7843  0.0
 stdout 2017-07-11T15:03:31.720527:    18  -0.1000  -0.1000  -0.1000   0.1000  -0.1000  -0.1000      0.7755   0.7755  0.0
 stdout 2017-07-11T15:03:31.720527:    45  -0.1000  -0.1000   0.0000   0.1000  -0.1000  -0.1000      0.7682   0.7682  0.0
 stdout 2017-07-11T15:03:31.720527:   117  -0.1000   0.0000   0.0000   0.0000  -0.1000  -0.1000      0.7671   0.7671  0.0
 stdout 2017-07-11T15:03:31.720527:   118  -0.1000   0.0000   0.0000   0.0000  -0.1000   0.0000      0.7654   0.7654  0.0
 stdout 2017-07-11T15:03:31.720527:   119  -0.1000   0.0000   0.0000   0.0000  -0.1000   0.1000      0.7626   0.7626  0.0
 stdout 2017-07-11T15:03:31.720527: 0  -25.0 -25.0 -25.0   1.009152
 stdout 2017-07-11T15:03:31.720527: 1  -25.0 -25.0  25.0   0.986578
 stdout 2017-07-11T15:03:31.720527: 2  -25.0  25.0 -25.0   1.016807
 stdout 2017-07-11T15:03:31.720527: 3  -25.0  25.0  25.0   0.997398
 stdout 2017-07-11T15:03:31.720527: 4   25.0 -25.0 -25.0   0.971724
 stdout 2017-07-11T15:03:31.720527: 5   25.0 -25.0  25.0   0.989586
 stdout 2017-07-11T15:03:31.720527: 6   25.0  25.0 -25.0   0.990133
 stdout 2017-07-11T15:03:31.720527: 7   25.0  25.0  25.0   1.006882
 stdout 2017-07-11T15:03:31.720527:------------------------------------
 stdout 2017-07-11T15:03:31.720527:Brute force preopt -0.1 0.1 0.1, n = 729
 stdout 2017-07-11T15:03:31.720527:Computing relative cost
 stdout 2017-07-11T15:03:31.720527:Cost   0.9952
 stdout 2017-07-11T15:03:31.720527:Ctx Intensity  1414.0005 +/- 335.7991
 stdout 2017-07-11T15:03:31.720527:If the mov data has a T1 contrast, re-run with --T1
 stdout 2017-07-11T15:03:31.720527:Initial costs ----------------
 stdout 2017-07-11T15:03:31.720527:Number of surface hits 30658
 stdout 2017-07-11T15:03:31.720527:Pct Contrast     -0.3689 +/-  21.9391
 stdout 2017-07-11T15:03:31.720527:REL:  8  0.995232    7.968260  0.996033 rel = 0.999197 
 stdout 2017-07-11T15:03:31.720527:RelCost   0.9992
 stdout 2017-07-11T15:03:31.720527:Using lh.cortex.label
 stdout 2017-07-11T15:03:31.720527:Using rh.cortex.label
 stdout 2017-07-11T15:03:31.720527:WARNING: initial G-W contrast is negative, but expecting positive.
 stdout 2017-07-11T15:03:31.720527:WM  Intensity  1414.7724 +/- 318.3188
 stdout 2017-07-11T15:03:33.247552:
 stdout 2017-07-11T15:03:33.247552:   5 -0.718  0.000  0.000  0.000 -0.100  0.100   0.9921715677
 stdout 2017-07-11T15:03:33.247552:  ftol   0.000000
 stdout 2017-07-11T15:03:33.247552:  linmin_xtol_   0.001000
 stdout 2017-07-11T15:03:33.247552:  maxfev 36
 stdout 2017-07-11T15:03:33.247552:  nparams 6
 stdout 2017-07-11T15:03:33.247552:  powell nthiter 0: fret = 0.995229
 stdout 2017-07-11T15:03:33.247552: -0.100   0.000   0.000  0.000 -0.100  0.100 
 stdout 2017-07-11T15:03:33.247552:--------------------------------------------
 stdout 2017-07-11T15:03:33.247552:0 -0.1
 stdout 2017-07-11T15:03:33.247552:1 0
 stdout 2017-07-11T15:03:33.247552:2 0
 stdout 2017-07-11T15:03:33.247552:3 0
 stdout 2017-07-11T15:03:33.247552:4 -0.1
 stdout 2017-07-11T15:03:33.247552:5 0.1
 stdout 2017-07-11T15:03:33.247552:Brute Force --------------------------
 stdout 2017-07-11T15:03:33.247552:Init Powel Params dof = 6
 stdout 2017-07-11T15:03:33.247552:Min cost was 0.762598
 stdout 2017-07-11T15:03:33.247552:Number of iterations   729
 stdout 2017-07-11T15:03:33.247552:Parameters at best (transmm, rotdeg)
 stdout 2017-07-11T15:03:33.247552:Search time 1.293000 sec
 stdout 2017-07-11T15:03:33.247552:Starting Powell Minimization
 stdout 2017-07-11T15:03:33.247552:fs_powell::minimize
 stdout 2017-07-11T15:03:33.751644:  11 -0.721  0.000  0.000  0.000 -0.100  0.100   0.9921701164
 stdout 2017-07-11T15:03:34.252936:  15 -0.721  1.000  0.000  0.000 -0.100  0.100   0.9914298739
 stdout 2017-07-11T15:03:34.252936:  16 -0.721  2.618  0.000  0.000 -0.100  0.100   0.9831249310
 stdout 2017-07-11T15:03:34.252936:  17 -0.721  5.236  0.000  0.000 -0.100  0.100   0.9828118724
 stdout 2017-07-11T15:03:34.252936:  18 -0.721  3.978  0.000  0.000 -0.100  0.100   0.9762145908
 stdout 2017-07-11T15:03:34.754686:  22 -0.721  3.942  0.000  0.000 -0.100  0.100   0.9754972835
 stdout 2017-07-11T15:03:34.754686:  24 -0.721  3.888  0.000  0.000 -0.100  0.100   0.9754595832
 stdout 2017-07-11T15:03:34.754686:  25 -0.721  3.913  0.000  0.000 -0.100  0.100   0.9753542217
 stdout 2017-07-11T15:03:35.256221:  32 -0.721  3.913 -1.618  0.000 -0.100  0.100   0.9734098793
 stdout 2017-07-11T15:03:35.256221:  33 -0.721  3.913 -1.224  0.000 -0.100  0.100   0.9708211184
 stdout 2017-07-11T15:03:35.757657:  37 -0.721  3.913 -1.375  0.000 -0.100  0.100   0.9708066521
 stdout 2017-07-11T15:03:35.757657:  38 -0.721  3.913 -1.302  0.000 -0.100  0.100   0.9705266928
 stdout 2017-07-11T15:03:35.757657:  39 -0.721  3.913 -1.300  0.000 -0.100  0.100   0.9705212308
 stdout 2017-07-11T15:03:36.259099:  41 -0.721  3.913 -1.297  0.000 -0.100  0.100   0.9705145088
 stdout 2017-07-11T15:03:36.259099:  43 -0.721  3.913 -1.293  0.000 -0.100  0.100   0.9705075037
 stdout 2017-07-11T15:03:36.259099:  44 -0.721  3.913 -1.291  0.000 -0.100  0.100   0.9705042804
 stdout 2017-07-11T15:03:36.259099:  45 -0.721  3.913 -1.290  0.000 -0.100  0.100   0.9705023162
 stdout 2017-07-11T15:03:36.760596:  53 -0.721  3.913 -1.290 -0.256 -0.100  0.100   0.9697594593
 stdout 2017-07-11T15:03:37.772862:  66 -0.721  3.913 -1.290 -0.256 -1.718  0.100   0.9639414620
 stdout 2017-07-11T15:03:38.273751:  68 -0.721  3.913 -1.290 -0.256 -4.336  0.100   0.9558273466
 stdout 2017-07-11T15:03:38.273751:  72 -0.721  3.913 -1.290 -0.256 -6.074  0.100   0.9547661091
 stdout 2017-07-11T15:03:38.273751:  74 -0.721  3.913 -1.290 -0.256 -6.073  0.100   0.9547382440
 stdout 2017-07-11T15:03:38.775177:  75 -0.721  3.913 -1.290 -0.256 -5.410  0.100   0.9531373450
 stdout 2017-07-11T15:03:38.775177:  76 -0.721  3.913 -1.290 -0.256 -5.710  0.100   0.9515340868
 stdout 2017-07-11T15:03:38.775177:  79 -0.721  3.913 -1.290 -0.256 -5.773  0.100   0.9513517581
 stdout 2017-07-11T15:03:38.775177:  80 -0.721  3.913 -1.290 -0.256 -5.767  0.100   0.9513174617
 stdout 2017-07-11T15:03:38.775177:  81 -0.721  3.913 -1.290 -0.256 -5.751  0.100   0.9513078337
 stdout 2017-07-11T15:03:39.276816:  83 -0.721  3.913 -1.290 -0.256 -5.757  0.100   0.9512984123
 stdout 2017-07-11T15:03:39.778242:  90 -0.721  3.913 -1.290 -0.256 -5.758 -0.518   0.9481374224
 stdout 2017-07-11T15:03:40.279371:  99 -0.721  3.913 -1.290 -0.256 -5.758 -0.517   0.9480974118
 stdout 2017-07-11T15:03:40.279371: 101 -0.721  3.913 -1.290 -0.256 -5.758 -0.516   0.9480944909
 stdout 2017-07-11T15:03:40.279371: 102 -0.721  3.913 -1.290 -0.256 -5.758 -0.515   0.9480921496
 stdout 2017-07-11T15:03:40.780814:  powell nthiter 1: fret = 0.948092
 stdout 2017-07-11T15:03:40.780814: 106 -2.339  3.913 -1.290 -0.256 -5.758 -0.515   0.9436291687
 stdout 2017-07-11T15:03:40.780814: 108 -4.957  3.913 -1.290 -0.256 -5.758 -0.515   0.9417853968
 stdout 2017-07-11T15:03:41.793187: 122 -2.358  4.913 -1.290 -0.256 -5.758 -0.515   0.9413339110
 stdout 2017-07-11T15:03:42.804822: 132 -2.358  4.905 -1.290 -0.256 -5.758 -0.515   0.9412746112
 stdout 2017-07-11T15:03:42.804822: 134 -2.358  4.908 -1.290 -0.256 -5.758 -0.515   0.9410892677
 stdout 2017-07-11T15:03:43.306167: 138 -2.358  4.908 -0.290 -0.256 -5.758 -0.515   0.9370940296
 stdout 2017-07-11T15:03:43.306167: 141 -2.358  4.908  0.328 -0.256 -5.758 -0.515   0.9368441579
 stdout 2017-07-11T15:03:43.306167: 143 -2.358  4.908  0.037 -0.256 -5.758 -0.515   0.9361391326
 stdout 2017-07-11T15:03:43.807640: 145 -2.358  4.908 -0.088 -0.256 -5.758 -0.515   0.9360822517
 stdout 2017-07-11T15:03:43.807640: 146 -2.358  4.908 -0.043 -0.256 -5.758 -0.515   0.9360662464
 stdout 2017-07-11T15:03:43.807640: 147 -2.358  4.908 -0.048 -0.256 -5.758 -0.515   0.9360580202
 stdout 2017-07-11T15:03:43.807640: 148 -2.358  4.908 -0.062 -0.256 -5.758 -0.515   0.9360228233
 stdout 2017-07-11T15:03:43.807640: 151 -2.358  4.908 -0.064 -0.256 -5.758 -0.515   0.9360187325
 stdout 2017-07-11T15:03:44.308936: 152 -2.358  4.908 -0.067 -0.256 -5.758 -0.515   0.9360149079
 stdout 2017-07-11T15:03:44.308936: 153 -2.358  4.908 -0.070 -0.256 -5.758 -0.515   0.9360122491
 stdout 2017-07-11T15:03:44.308936: 155 -2.358  4.908 -0.071 -0.256 -5.758 -0.515   0.9360114826
 stdout 2017-07-11T15:03:44.308936: 157 -2.358  4.908 -0.071  0.744 -5.758 -0.515   0.9335908896
 stdout 2017-07-11T15:03:44.810543: 161 -2.358  4.908 -0.071  0.362 -5.758 -0.515   0.9335017621
 stdout 2017-07-11T15:03:44.810543: 162 -2.358  4.908 -0.071  0.534 -5.758 -0.515   0.9331772091
 stdout 2017-07-11T15:03:45.311872: 168 -2.358  4.908 -0.071  0.537 -5.758 -0.515   0.9331750105
 stdout 2017-07-11T15:03:45.812906: 175 -2.358  4.908 -0.071  0.537 -6.376 -0.515   0.9318671685
 stdout 2017-07-11T15:03:45.812906: 179 -2.358  4.908 -0.071  0.537 -6.290 -0.515   0.9316409240
 stdout 2017-07-11T15:03:46.314567: 181 -2.358  4.908 -0.071  0.537 -6.249 -0.515   0.9315647117
 stdout 2017-07-11T15:03:46.314567: 182 -2.358  4.908 -0.071  0.537 -6.264 -0.515   0.9315144122
 stdout 2017-07-11T15:03:46.314567: 183 -2.358  4.908 -0.071  0.537 -6.265 -0.515   0.9315121049
 stdout 2017-07-11T15:03:46.314567: 185 -2.358  4.908 -0.071  0.537 -6.269 -0.515   0.9315100555
 stdout 2017-07-11T15:03:47.327088: 194 -2.358  4.908 -0.071  0.537 -6.269 -0.421   0.9314855906
 stdout 2017-07-11T15:03:47.327088: 195 -2.358  4.908 -0.071  0.537 -6.269 -0.444   0.9314813222
 stdout 2017-07-11T15:03:47.327088: 197 -2.358  4.908 -0.071  0.537 -6.269 -0.435   0.9314733015
 stdout 2017-07-11T15:03:47.327088: 198 -2.358  4.908 -0.071  0.537 -6.269 -0.434   0.9314678885
 stdout 2017-07-11T15:03:47.828649: 201 -3.995  5.902  1.148  1.330 -6.780 -0.353   0.9230997282
 stdout 2017-07-11T15:03:48.330431: 208 -4.300  6.088  1.375  1.477 -6.875 -0.337   0.9190053699
 stdout 2017-07-11T15:03:48.330431: 210 -4.203  6.029  1.303  1.430 -6.845 -0.342   0.9182827148
 stdout 2017-07-11T15:03:48.831614: 215 -4.192  6.022  1.294  1.425 -6.841 -0.343   0.9180778486
 stdout 2017-07-11T15:03:48.831614: 217 -4.196  6.025  1.297  1.427 -6.842 -0.343   0.9180648995
 stdout 2017-07-11T15:03:48.831614: 218 -4.198  6.026  1.299  1.428 -6.843 -0.342   0.9180111109
 stdout 2017-07-11T15:03:49.333062:  powell nthiter 2: fret = 0.918011
 stdout 2017-07-11T15:03:49.333062: 224 -4.816  6.026  1.299  1.428 -6.843 -0.342   0.9136710216
 stdout 2017-07-11T15:03:49.333062: 225 -5.198  6.026  1.299  1.428 -6.843 -0.342   0.9126732957
 stdout 2017-07-11T15:03:49.333062: 228 -5.144  6.026  1.299  1.428 -6.843 -0.342   0.9126347656
 stdout 2017-07-11T15:03:49.834294: 229 -5.163  6.026  1.299  1.428 -6.843 -0.342   0.9125639757
 stdout 2017-07-11T15:03:49.834294: 230 -5.168  6.026  1.299  1.428 -6.843 -0.342   0.9125565993
 stdout 2017-07-11T15:03:49.834294: 231 -5.174  6.026  1.299  1.428 -6.843 -0.342   0.9125556236
 stdout 2017-07-11T15:03:49.834294: 232 -5.172  6.026  1.299  1.428 -6.843 -0.342   0.9125544573
 stdout 2017-07-11T15:03:49.834294: 233 -5.171  6.026  1.299  1.428 -6.843 -0.342   0.9125542239
 stdout 2017-07-11T15:03:50.846325: 243 -5.171  5.946  1.299  1.428 -6.843 -0.342   0.9115832567
 stdout 2017-07-11T15:03:50.846325: 244 -5.171  5.936  1.299  1.428 -6.843 -0.342   0.9115709103
 stdout 2017-07-11T15:03:50.846325: 245 -5.171  5.937  1.299  1.428 -6.843 -0.342   0.9115700668
 stdout 2017-07-11T15:03:50.846325: 246 -5.171  5.938  1.299  1.428 -6.843 -0.342   0.9115612340
 stdout 2017-07-11T15:03:51.347902: 250 -5.171  5.938  1.299  1.428 -6.843  0.658   0.9093404010
 stdout 2017-07-11T15:03:51.347902: 251 -5.171  5.938  1.299  1.428 -6.843  2.276   0.9024341040
 stdout 2017-07-11T15:03:51.347902: 252 -5.171  5.938  1.299  1.428 -6.843  4.894   0.8932331307
 stdout 2017-07-11T15:03:51.849378: 257 -5.171  5.938  1.299  1.428 -6.843  4.511   0.8916679276
 stdout 2017-07-11T15:03:51.849378: 261 -5.171  5.938  1.299  1.428 -6.843  4.657   0.8912970978
 stdout 2017-07-11T15:03:52.350345: 266 -5.171  5.938  1.299  1.428 -6.843  4.667   0.8912731879
 stdout 2017-07-11T15:03:52.350345: 267 -5.171  5.938  1.299  1.428 -6.843  4.664   0.8912118337
 stdout 2017-07-11T15:03:52.851720: 271 -5.171  5.938  1.299  2.428 -6.843  4.664   0.8757162316
 stdout 2017-07-11T15:03:52.851720: 274 -5.171  5.938  1.299  3.046 -6.843  4.664   0.8674700040
 stdout 2017-07-11T15:03:53.352960: 278 -5.171  5.938  1.299  3.013 -6.843  4.664   0.8670326448
 stdout 2017-07-11T15:03:55.897360:  powell nthiter 3: fret = 0.867033
 stdout 2017-07-11T15:03:55.897360: 319 -5.259  5.938  1.299  3.013 -6.843  4.664   0.8662323214
 stdout 2017-07-11T15:03:55.897360: 320 -5.270  5.938  1.299  3.013 -6.843  4.664   0.8661582560
 stdout 2017-07-11T15:03:56.399014: 322 -5.289  5.938  1.299  3.013 -6.843  4.664   0.8661217758
 stdout 2017-07-11T15:03:56.399014: 323 -5.288  5.938  1.299  3.013 -6.843  4.664   0.8661201809
 stdout 2017-07-11T15:03:56.399014: 324 -5.285  5.938  1.299  3.013 -6.843  4.664   0.8661190326
 stdout 2017-07-11T15:03:56.399014: 326 -5.286  5.938  1.299  3.013 -6.843  4.664   0.8661183795
 stdout 2017-07-11T15:03:57.411523: 334 -5.286  5.862  1.299  3.013 -6.843  4.664   0.8660282196
 stdout 2017-07-11T15:03:57.411523: 335 -5.286  5.886  1.299  3.013 -6.843  4.664   0.8658553537
 stdout 2017-07-11T15:03:57.411523: 336 -5.286  5.896  1.299  3.013 -6.843  4.664   0.8656642070
 stdout 2017-07-11T15:03:57.411523: 339 -5.286  5.893  1.299  3.013 -6.843  4.664   0.8655686112
 stdout 2017-07-11T15:03:57.411523: 340 -5.286  5.890  1.299  3.013 -6.843  4.664   0.8655085932
 stdout 2017-07-11T15:03:58.424273: 348 -5.286  5.890  1.299  3.013 -6.843  5.046   0.8633464157
 stdout 2017-07-11T15:03:58.424273: 350 -5.286  5.890  1.299  3.013 -6.843  4.984   0.8628349684
 stdout 2017-07-11T15:03:58.424273: 354 -5.286  5.890  1.299  3.013 -6.843  4.973   0.8628055318
 stdout 2017-07-11T15:03:58.926379: 357 -5.286  5.890  1.299  3.013 -6.843  4.971   0.8627955862
 stdout 2017-07-11T15:03:58.926379: 359 -5.286  5.890  1.299  3.013 -6.843  4.972   0.8627942110
 stdout 2017-07-11T15:03:59.427483: 368 -5.286  5.890  1.299  2.986 -6.843  4.972   0.8626990540
 stdout 2017-07-11T15:03:59.928721: 369 -5.286  5.890  1.299  2.993 -6.843  4.972   0.8626974365
 stdout 2017-07-11T15:04:00.429725: 383 -5.286  5.890  1.299  2.993 -6.842  4.972   0.8626941114
 stdout 2017-07-11T15:04:00.930977: 385 -5.286  5.890  1.299  2.993 -6.839  4.972   0.8626842585
 stdout 2017-07-11T15:04:00.930977: 386 -5.286  5.890  1.299  2.993 -6.837  4.972   0.8626800805
 stdout 2017-07-11T15:04:00.930977: 387 -5.286  5.890  1.299  2.993 -6.835  4.972   0.8626773324
 stdout 2017-07-11T15:04:00.930977: 388 -5.286  5.890  1.299  2.993 -6.834  4.972   0.8626754269
 stdout 2017-07-11T15:04:01.943053: 399 -5.287  5.891  1.300  2.994 -6.835  4.972   0.8626613397
 stdout 2017-07-11T15:04:02.444252:  powell nthiter 4: fret = 0.862661
 stdout 2017-07-11T15:04:02.444252: 410 -5.303  5.891  1.300  2.994 -6.835  4.972   0.8626158309
 stdout 2017-07-11T15:04:04.989241: 447 -5.303  5.891  1.300  2.993 -6.835  4.972   0.8626143203
 stdout 2017-07-11T15:04:06.001230: 457 -5.303  5.891  1.300  2.993 -6.839  4.972   0.8626055667
 stdout 2017-07-11T15:04:06.001230: 458 -5.303  5.891  1.300  2.993 -6.847  4.972   0.8626008996
 stdout 2017-07-11T15:04:06.001230: 459 -5.303  5.891  1.300  2.993 -6.845  4.972   0.8625998348
 stdout 2017-07-11T15:04:06.001230: 460 -5.303  5.891  1.300  2.993 -6.844  4.972   0.8625995604
 stdout 2017-07-11T15:04:07.013785: 474 -5.318  5.891  1.300  2.992 -6.853  4.972   0.8625858933
 stdout 2017-07-11T15:04:07.515067: 480 -5.312  5.891  1.300  2.992 -6.850  4.972   0.8625843628
 stdout 2017-07-11T15:04:07.515067: 481 -5.314  5.891  1.300  2.992 -6.850  4.972   0.8625837831
 stdout 2017-07-11T15:04:07.515067: 482 -5.315  5.891  1.300  2.992 -6.851  4.972   0.8625834147
 stdout 2017-07-11T15:04:11.081308:  powell nthiter 5: fret = 0.862583
 stdout 2017-07-11T15:04:11.081308: 526 -5.315  5.891  1.300  2.992 -6.851  4.973   0.8625822797
 stdout 2017-07-11T15:04:12.604577: 551 -5.315  5.891  1.300  2.992 -6.854  4.973   0.8625775775
 stdout 2017-07-11T15:04:13.617001: 561 -5.317  5.891  1.300  2.992 -6.855  4.973   0.8625771015
 stdout 2017-07-11T15:04:13.617001: 562 -5.316  5.891  1.300  2.992 -6.855  4.973   0.8625769286
 stdout 2017-07-11T15:04:14.118174: 568 -5.317  5.891  1.300  2.992 -6.855  4.973   0.8625768825
 stdout 2017-07-11T15:04:19.218283:  powell nthiter 6: fret = 0.862577
 stdout 2017-07-11T15:04:19.218283: 638 -5.317  5.891  1.300  2.992 -6.856  4.973   0.8625757120
 stdout 2017-07-11T15:04:19.719716: 646 -5.317  5.891  1.300  2.992 -6.856  4.973   0.8625754343
 stdout 2017-07-11T15:04:19.719716: 648 -5.317  5.891  1.300  2.992 -6.856  4.973   0.8625754322
 stdout 2017-07-11T15:04:19.719716: 649 -5.317  5.891  1.300  2.992 -6.856  4.973   0.8625754105
 stdout 2017-07-11T15:04:26.864413:
 stdout 2017-07-11T15:04:26.864413:  powell nthiter 7: fret = 0.862575
 stdout 2017-07-11T15:04:26.864413: 0  -25.0 -25.0 -25.0   1.013216
 stdout 2017-07-11T15:04:26.864413: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:04:26.864413: 0.14223   0.94333  -0.29983   26.39465;
 stdout 2017-07-11T15:04:26.864413: 0.15321   0.27828   0.94820   20.32456;
 stdout 2017-07-11T15:04:26.864413: 0.97790  -0.18080  -0.10495  -8.00557;
 stdout 2017-07-11T15:04:26.864413: 1  -25.0 -25.0  25.0   0.986653
 stdout 2017-07-11T15:04:26.864413: 2  -25.0  25.0 -25.0   1.006949
 stdout 2017-07-11T15:04:26.864413: 3  -25.0  25.0  25.0   1.025837
 stdout 2017-07-11T15:04:26.864413: 4   25.0 -25.0 -25.0   1.015926
 stdout 2017-07-11T15:04:26.864413: 5   25.0 -25.0  25.0   0.996754
 stdout 2017-07-11T15:04:26.864413: 6   25.0  25.0 -25.0   1.082515
 stdout 2017-07-11T15:04:26.864413: 7   25.0  25.0  25.0   1.021376
 stdout 2017-07-11T15:04:26.864413:Computing relative cost
 stdout 2017-07-11T15:04:26.864413:Cost   0.8626
 stdout 2017-07-11T15:04:26.864413:Ctx Intensity  1431.7073 +/- 283.5650
 stdout 2017-07-11T15:04:26.864413:Final costs ----------------
 stdout 2017-07-11T15:04:26.864413:Min cost was 0.862575
 stdout 2017-07-11T15:04:26.864413:Number of FunctionCalls   738
 stdout 2017-07-11T15:04:26.864413:Number of iterations     7
 stdout 2017-07-11T15:04:26.864413:Number of surface hits 21156
 stdout 2017-07-11T15:04:26.864413:OptimizationTime 53.476000 sec
 stdout 2017-07-11T15:04:26.864413:Parameters at optimum (rotdeg)  2.99163 -6.85612  4.97339 
 stdout 2017-07-11T15:04:26.864413:Parameters at optimum (transmm) -5.31683  5.89117  1.29991
 stdout 2017-07-11T15:04:26.864413:Pct Contrast      1.9439 +/-  17.6670
 stdout 2017-07-11T15:04:26.864413:Powell done niters = 7
 stdout 2017-07-11T15:04:26.864413:REL:  8  0.862575    8.149224  1.018653 rel = 0.84678 
 stdout 2017-07-11T15:04:26.864413:Reg at min cost was 
 stdout 2017-07-11T15:04:26.864413:RelCost   0.9992
 stdout 2017-07-11T15:04:26.864413:TolPowell 0.000000
 stdout 2017-07-11T15:04:26.864413:WM  Intensity  1399.8069 +/- 257.3744
 stdout 2017-07-11T15:04:26.864413:Writing optimal reg to /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat, type = 14 
 stdout 2017-07-11T15:04:26.864413:nMaxItersPowell 36
 stdout 2017-07-11T15:04:28.390959:
 stdout 2017-07-11T15:04:28.390959:
 stdout 2017-07-11T15:04:28.390959:
 stdout 2017-07-11T15:04:28.390959:
 stdout 2017-07-11T15:04:28.390959:
 stdout 2017-07-11T15:04:28.390959:
 stdout 2017-07-11T15:04:28.390959: 0.00000   0.00000   0.00000   0.00000;
 stdout 2017-07-11T15:04:28.390959: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:04:28.390959: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:04:28.390959: 0.01952   0.13853   0.04697   9.58416;
 stdout 2017-07-11T15:04:28.390959: 0.01976   0.93862  -0.34439   24.28888;
 stdout 2017-07-11T15:04:28.390959: 0.06898   0.34236   0.93703   15.90146;
 stdout 2017-07-11T15:04:28.390959: 0.14223   0.94333  -0.29983   26.39465;
 stdout 2017-07-11T15:04:28.390959: 0.15321   0.27828   0.94820   20.32456;
 stdout 2017-07-11T15:04:28.390959: 0.97790  -0.18080  -0.10495  -8.00557;
 stdout 2017-07-11T15:04:28.390959: 0.99742  -0.04227  -0.05798   1.57859;
 stdout 2017-07-11T15:04:28.390959:$Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $
 stdout 2017-07-11T15:04:28.390959:---- Input registration matrix --------
 stdout 2017-07-11T15:04:28.390959:-0.08423   0.06408  -0.01117  -4.42310;
 stdout 2017-07-11T15:04:28.390959:-0.12248  -0.00471  -0.04456  -2.10577;
 stdout 2017-07-11T15:04:28.390959:Computing change in lh position
 stdout 2017-07-11T15:04:28.390959:Computing change in rh position
 stdout 2017-07-11T15:04:28.390959:Diagnostic Level -1
 stdout 2017-07-11T15:04:28.390959:INFO: no target volume specified, assuming FreeSurfer orig volume.
 stdout 2017-07-11T15:04:28.390959:If the mov data has a T1 contrast, re-run with --T1
 stdout 2017-07-11T15:04:28.390959:LH rmsDiffMean 10.539269
 stdout 2017-07-11T15:04:28.390959:LoadVol        0
 stdout 2017-07-11T15:04:28.390959:MinCost: 0.862575 1399.806928 1431.707253 1.943868 
 stdout 2017-07-11T15:04:28.390959:Original Reg 
 stdout 2017-07-11T15:04:28.390959:Original Reg - Optimal Reg
 stdout 2017-07-11T15:04:28.390959:Surface-RMS-Diff-mm 13.024865 4.222859 22.470277
 stdout 2017-07-11T15:04:28.390959:WARNING: initial G-W contrast was negative, but expected positive.
 stdout 2017-07-11T15:04:28.390959:Writing output volume to /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii 
 stdout 2017-07-11T15:04:28.390959:ZeroCRAS       0
 stdout 2017-07-11T15:04:28.390959:movable volume /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii
 stdout 2017-07-11T15:04:28.390959:mri_segreg done
 stdout 2017-07-11T15:04:28.390959:reg file       /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat
 stdout 2017-07-11T15:04:28.390959:target  volume orig
 stdout 2017-07-11T15:04:28.390959:tkregister2_cmdl --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --noedit --fslregout /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.mat
 stdout 2017-07-11T15:04:28.390959:tkregister_tcl /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/tktools/tkregister2.tcl
 stdout 2017-07-11T15:04:28.896677: 
 stdout 2017-07-11T15:04:28.896677: 
 stdout 2017-07-11T15:04:28.896677: 
 stdout 2017-07-11T15:04:28.896677:      applying LR flip to registration matrix.
 stdout 2017-07-11T15:04:28.896677: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:04:28.896677: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:04:28.896677: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:04:28.896677: 0.00000   0.00000   0.00000   1.00000;
 stdout 2017-07-11T15:04:28.896677: 0.00000   0.00000   1.00000  -128.00000;
 stdout 2017-07-11T15:04:28.896677: 0.00000   0.00000   1.10000  -15.40001;
 stdout 2017-07-11T15:04:28.896677: 0.00000  -1.00000   0.00000   128.00000;
 stdout 2017-07-11T15:04:28.896677: 0.00000  -1.10000   0.00000   66.00001;
 stdout 2017-07-11T15:04:28.896677: 0.14223   0.94333  -0.29983   26.39465;
 stdout 2017-07-11T15:04:28.896677: 0.14223   0.94333  -0.29983   26.39465;
 stdout 2017-07-11T15:04:28.896677: 0.15321   0.27828   0.94820   20.32456;
 stdout 2017-07-11T15:04:28.896677: 0.15321   0.27828   0.94820   20.32456;
 stdout 2017-07-11T15:04:28.896677: 0.97790  -0.18080  -0.10495  -8.00557;
 stdout 2017-07-11T15:04:28.896677: 0.97790  -0.18080  -0.10495  -8.00557;
 stdout 2017-07-11T15:04:28.896677:---- Input registration matrix --------
 stdout 2017-07-11T15:04:28.896677:---------------------------------------
 stdout 2017-07-11T15:04:28.896677:-1.00000   0.00000   0.00000   128.00000;
 stdout 2017-07-11T15:04:28.896677:-1.10000   0.00000   0.00000   65.99999;
 stdout 2017-07-11T15:04:28.896677:BBR-Run-Time-Sec 98
 stdout 2017-07-11T15:04:28.896677:Cleaning up
 stdout 2017-07-11T15:04:28.896677:Determinant -0.999999
 stdout 2017-07-11T15:04:28.896677:Ended   at Tue Jul 11 15:04:28 CEST 2017
 stdout 2017-07-11T15:04:28.896677:FSLOUTPUTTYPE NIFTI_GZ 
 stdout 2017-07-11T15:04:28.896677:INFO: FSL2FreeSurfer: Mov volume is NIFTI with positive det,
 stdout 2017-07-11T15:04:28.896677:INFO: loading movable /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii
 stdout 2017-07-11T15:04:28.896677:INFO: loading target /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/mri/orig.mgz
 stdout 2017-07-11T15:04:28.896677:RegMat ---------------------------
 stdout 2017-07-11T15:04:28.896677:Started at Tue Jul 11 15:02:50 CEST 2017 
 stdout 2017-07-11T15:04:28.896677:Tmov: --------------------
 stdout 2017-07-11T15:04:28.896677:To check results, run:
 stdout 2017-07-11T15:04:28.896677:Ttarg: --------------------
 stdout 2017-07-11T15:04:28.896677:bbregister Done
 stdout 2017-07-11T15:04:28.896677:float2int = 0
 stdout 2017-07-11T15:04:28.896677:mkheaderreg = 0, float2int = 0
 stdout 2017-07-11T15:04:28.896677:subject = sub-01
 stdout 2017-07-11T15:04:28.896677:tkreg2FSL: mov det = 1.331, ref det = -1
 stdout 2017-07-11T15:04:28.896677:tkregisterfv --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_fsl/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --surfs 

Environment
~~~~~~~~~~~

* ANTSPATH : /afs/cbs.mpg.de/software/ants/2.1.0-rc3/ubuntu-xenial-amd64/antsbin/bin
* C3DPATH : /afs/cbs.mpg.de/software/convert3d/1.0.0-2014-09-19/ubuntu-xenial-amd64
* DISPLAY : :1
* ENVLIST : fsl=5.0.9:ants=2.1.0-rc3:c3d=1.0.0-2014-09-19:freesurfer=6.0.0
* FB_COLORIZE : 0
* FIX_VERTEX_AREA : 
* FMRI_ANALYSIS_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/fsfast
* FREESURFER_HOME : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64
* FSFAST_HOME : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/fsfast
* FSF_OUTPUT_FORMAT : nii.gz
* FSLBROWSER : /etc/alternatives/x-www-browser
* FSLCONVERT : /usr/bin/convert
* FSLDIR : /usr/share/fsl/5.0
* FSLDISPLAY : /usr/bin/display
* FSLLOCKDIR : 
* FSLMACHINELIST : 
* FSLMULTIFILEQUIT : TRUE
* FSLOUTPUTTYPE : NIFTI_GZ
* FSLREMOTECALL : 
* FSLTCLSH : /usr/bin/tclsh
* FSLWISH : /usr/bin/wish
* FSL_BIN : /afs/cbs.mpg.de/software/fsl/5.0.9/ubuntu-xenial-amd64/share/bin
* FSL_DIR : /afs/cbs.mpg.de/software/fsl/5.0.9/ubuntu-xenial-amd64/share
* FS_OVERRIDE : 0
* FUNCTIONALS_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/sessions
* HISTCONTROL : ignoreboth
* HISTSIZE : 50000
* HOME : /home/raid2/mihai
* KRB5CCNAME : FILE:/tmp/krb5cc_12560_xfhVv5we1e
* LANG : en_US.UTF-8
* LC_ALL : en_US.UTF-8
* LD_LIBRARY_PATH : /usr/lib/fsl/5.0:/afs/cbs.mpg.de/software/lib/zlib1g/ubuntu-xenial-amd64:/afs/cbs.mpg.de/software/fsl/5.0.9/ubuntu-xenial-amd64/bin:/afs/cbs.mpg.de/software/convert3d/1.0.0-2014-09-19/ubuntu-xenial-amd64/lib/c3d_gui-1.0.0:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/fsl/lib
* LOCALPROFILE : cbs-fb
* LOCAL_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/local
* LOGNAME : mihai
* MAIL : /var/mail/mihai
* MANPAGER : /usr/bin/less
* MATLABPATH : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/Survival:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/Survival/mass_univariate:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/Survival/univariate:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/Survival/ex_data:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/lme:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/lme/mass_univariate:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/lme/univariate:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/lme/Qdec:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/lme/geodesic
* MINC_BIN_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/bin
* MINC_LIB_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/lib
* MNI_DATAPATH : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/data
* MNI_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni
* MNI_PERL5LIB : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/share/perl5
* MOZ_PLUGIN_PATH : /afs/cbs.mpg.de/service/browserplugins/ubuntu-xenial-amd64
* OS : Linux
* PAGER : /usr/bin/less
* PATH : /nobackup/alster2/Glad/anaconda2_serverwide/bin:/afs/cbs.mpg.de/software/fsl/currentversion.ubuntu-xenial-amd64/ubuntu-xenial-amd64/bin:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/bin:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/fsfast/bin:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/tktools:/afs/cbs.mpg.de/software/fsl/5.0.9/ubuntu-xenial-amd64/share/bin:/usr/lib/fsl/5.0:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/bin:/afs/cbs.mpg.de/software/convert3d/1.0.0-2014-09-19/ubuntu-xenial-amd64/bin:/afs/cbs.mpg.de/software/convert3d/1.0.0-2014-09-19/ubuntu-xenial-amd64/lib/c3d_gui-1.0.0:/afs/cbs.mpg.de/software/ants/2.1.0-rc3/ubuntu-xenial-amd64/antsbin/bin:/afs/cbs.mpg.de/software/fsl/5.0.9/ubuntu-xenial-amd64/bin:/afs/cbs.mpg.de/software/fsl/currentversion.ubuntu-xenial-amd64/ubuntu-xenial-amd64/bin:/bin:/sbin:/opt/bin:/usr/bin:/usr/sbin:/afs/cbs.mpg.de/software/scripts:/afs/cbs.mpg.de/software/scripts/science:/afs/cbs.mpg.de/software/bin/linux:/usr/games:/home/raid2/mihai/Software/doublecmd/:/home/raid2/mihai/Software/pycharm-community-2016.1.2/bin/:~/Software/scripts/:/home/raid2/mihai/Software/doublecmd/:/home/raid2/mihai/Software/pycharm-community-2016.1.2/bin/:~/Software/scripts/
* PERL5LIB : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/share/perl5:/afs/cbs.mpg.de/software/perllib
* POSSUMDIR : /usr/share/fsl/5.0
* PS1 : freesurfer=6.0.0_\u@\h:\w > 
* PWD : /nobackup/alster2/Glad/Projects/Top-down_mod_MGB/Experiments/TdMGB_fMRI/DATA/code/analysis_pipeline_nypipe
* SHELL : /bin/bash
* SHINTERACTIVE : 1
* SHLVL : 2
* SHTERM : 1
* SLCLUSTER_MAILOPTS : n
* SSH_CLIENT : 10.0.65.235 38484 22
* SSH_CONNECTION : 10.0.65.235 38484 10.0.67.44 22
* SSH_TTY : /dev/pts/28
* SUBJECTS_DIR : /data/pt_nmc002/TDMGB_FMRI_ReconAll/
* TERM : xterm
* USER : mihai
* XDG_SESSION_COOKIE : c99354996f68442e9411a0dd1403234c-1499774136.404650-1832849722
* _ : /nobackup/alster2/Glad/anaconda2_serverwide/bin/python